RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 KRBA1A5PL33 1030 aa8.61□□□□□ -1.03
CD44-223ENST00000526553 EIF1AYO14602 144 aaKnown RBP8.61□□□□□ -1.03
CD44-223ENST00000526553 TREHO43280 583 aa8.61□□□□□ -1.03
CD44-223ENST00000526553 PTPRAP18433 802 aa8.61□□□□□ -1.03
CD44-223ENST00000526553 FMR1NBQ8N0W7 255 aaPredicted RBP8.61□□□□□ -1.03
CD44-223ENST00000526553 IL22RA1Q8N6P7 574 aa8.61□□□□□ -1.03
CD44-223ENST00000526553 POP1Q99575 1024 aaKnown RBP8.61□□□□□ -1.03
CD44-223ENST00000526553 OSMRQ99650 979 aa8.61□□□□□ -1.03
CD44-223ENST00000526553 ZKSCAN3Q9BRR0 538 aa8.61□□□□□ -1.03
CD44-223ENST00000526553 SRA1Q9HD15 236 aaKnown RBP8.61□□□□□ -1.03
CD44-223ENST00000526553 FAM229AH3BQW9 127 aa8.6□□□□□ -1.03
CD44-223ENST00000526553 PDE2AO00408 941 aaPredicted RBP8.6□□□□□ -1.03
CD44-223ENST00000526553 ELNP15502 786 aa8.6□□□□□ -1.03
CD44-223ENST00000526553 DSC3Q14574 896 aa8.6□□□□□ -1.03
CD44-223ENST00000526553 PEAR1Q5VY43 1037 aaPredicted RBP8.6□□□□□ -1.03
CD44-223ENST00000526553 USPL1Q5W0Q7 1092 aa8.6□□□□□ -1.03
CD44-223ENST00000526553 CSRNP1Q96S65 589 aa8.6□□□□□ -1.03
CD44-223ENST00000526553 ADAM19Q9H013 955 aa8.6□□□□□ -1.03
CD44-223ENST00000526553 POLR3DP05423 398 aaPredicted RBP8.59□□□□□ -1.03
CD44-223ENST00000526553 CDC27P30260 824 aa8.59□□□□□ -1.03
CD44-223ENST00000526553 PLA2G4EQ3MJ16 856 aa8.59□□□□□ -1.03
CD44-223ENST00000526553 MAP4K3Q8IVH8 894 aa8.59□□□□□ -1.03
CD44-223ENST00000526553 NACC1Q96RE7 527 aa8.59□□□□□ -1.03
CD44-223ENST00000526553 BHLHE41Q9C0J9 482 aaPredicted RBP8.59□□□□□ -1.03
CD44-223ENST00000526553 LACRTQ9GZZ8 138 aa8.59□□□□□ -1.03
CD44-223ENST00000526553 LATS2Q9NRM7 1088 aa8.59□□□□□ -1.03
CD44-223ENST00000526553 FAM177BA6PVY3 158 aa8.58□□□□□ -1.04
CD44-223ENST00000526553 ADAMTSL4Q6UY14 1074 aa8.58□□□□□ -1.04
CD44-223ENST00000526553 FBXO11Q86XK2 927 aa8.58□□□□□ -1.04
CD44-223ENST00000526553 NXPE3Q969Y0 559 aa8.58□□□□□ -1.04
CD44-223ENST00000526553 HHIPQ96QV1 700 aa8.58□□□□□ -1.04
CD44-223ENST00000526553 PPME1Q9Y570 386 aa8.58□□□□□ -1.04
CD44-223ENST00000526553 A0A1W2PP55 124 aa8.57□□□□□ -1.04
CD44-223ENST00000526553 TRPA1O75762 1119 aa8.57□□□□□ -1.04
CD44-223ENST00000526553 APBA3O96018 575 aa8.57□□□□□ -1.04
CD44-223ENST00000526553 PLCB3Q01970 1234 aa8.57□□□□□ -1.04
CD44-223ENST00000526553 FMR1Q06787 632 aaKnown RBP eCLIP8.57□□□□□ -1.04
CD44-223ENST00000526553 KIAA0319Q5VV43 1072 aa8.57□□□□□ -1.04
CD44-223ENST00000526553 DCAF11Q8TEB1 546 aa8.57□□□□□ -1.04
CD44-223ENST00000526553 CCDC74AQ96AQ1 378 aa8.57□□□□□ -1.04
CD44-223ENST00000526553 DEAF1O75398 565 aaPredicted RBP8.56□□□□□ -1.04
CD44-223ENST00000526553 ITGB2P05107 769 aa8.56□□□□□ -1.04
CD44-223ENST00000526553 NPHS2Q9NP85 383 aa8.56□□□□□ -1.04
CD44-223ENST00000526553 SOX13Q9UN79 622 aa8.56□□□□□ -1.04
CD44-223ENST00000526553 EPHA1P21709 976 aa8.55□□□□□ -1.04
CD44-223ENST00000526553 CHRNA4P43681 627 aa8.55□□□□□ -1.04
CD44-223ENST00000526553 SETDB1Q15047 1291 aa8.55□□□□□ -1.04
CD44-223ENST00000526553 GRIK4Q16099 956 aa8.55□□□□□ -1.04
CD44-223ENST00000526553 ENOX2Q16206 610 aaKnown RBP8.55□□□□□ -1.04
CD44-223ENST00000526553 CD163Q86VB7 1156 aa8.55□□□□□ -1.04
CD44-223ENST00000526553 BSNDQ8WZ55 320 aa8.55□□□□□ -1.04
CD44-223ENST00000526553 PNMA6FA0A0J9YX94 578 aa8.54□□□□□ -1.04
CD44-223ENST00000526553 C1QTNF9BB2RNN3 333 aa8.54□□□□□ -1.04
CD44-223ENST00000526553 C9orf172C9J069 976 aa8.54□□□□□ -1.04
CD44-223ENST00000526553 H3BRJ5 948 aa8.54□□□□□ -1.04
CD44-223ENST00000526553 LINC01387J3KSC0 135 aa8.54□□□□□ -1.04
CD44-223ENST00000526553 DLL1O00548 723 aa8.54□□□□□ -1.04
CD44-223ENST00000526553 IGHA1P01876 353 aa8.54□□□□□ -1.04
CD44-223ENST00000526553 CABP4P57796 275 aa8.54□□□□□ -1.04
CD44-223ENST00000526553 FAM117BQ6P1L5 589 aa8.54□□□□□ -1.04
CD44-223ENST00000526553 CCNJLQ8IV13 435 aa8.54□□□□□ -1.04
CD44-223ENST00000526553 TCF12Q99081 682 aa8.54□□□□□ -1.04
CD44-223ENST00000526553 LIN7BQ9HAP6 207 aa8.54□□□□□ -1.04
CD44-223ENST00000526553 SH2B1Q9NRF2 756 aaPredicted RBP8.54□□□□□ -1.04
CD44-223ENST00000526553 SELPP16109 830 aa8.53□□□□□ -1.04
CD44-223ENST00000526553 WNT8BQ93098 351 aa8.53□□□□□ -1.04
CD44-223ENST00000526553 LENG1Q96BZ8 264 aaPredicted RBP8.53□□□□□ -1.04
CD44-223ENST00000526553 GZF1Q9H116 711 aaPredicted RBP8.53□□□□□ -1.04
CD44-223ENST00000526553 NRG1Q02297 640 aaPredicted RBP8.52□□□□□ -1.05
CD44-223ENST00000526553 IGF2-ASQ6U949 168 aa8.52□□□□□ -1.05
CD44-223ENST00000526553 ASAP3Q8TDY4 903 aa8.52□□□□□ -1.05
CD44-223ENST00000526553 FBF1Q8TES7 1133 aa8.52□□□□□ -1.05
CD44-223ENST00000526553 FSCN2O14926 492 aa8.51□□□□□ -1.05
CD44-223ENST00000526553 MAPK8P45983 427 aa8.51□□□□□ -1.05
CD44-223ENST00000526553 PIP4K2BP78356 416 aa8.51□□□□□ -1.05
CD44-223ENST00000526553 COL19A1Q14993 1142 aa8.51□□□□□ -1.05
CD44-223ENST00000526553 GPAT2Q6NUI2 795 aa8.51□□□□□ -1.05
CD44-223ENST00000526553 PRPF40BQ6NWY9 871 aaKnown RBP8.51□□□□□ -1.05
CD44-223ENST00000526553 TXNDC11Q6PKC3 985 aa8.51□□□□□ -1.05
CD44-223ENST00000526553 SHISA2Q6UWI4 295 aa8.51□□□□□ -1.05
CD44-223ENST00000526553 VN1R5Q7Z5H4 357 aa8.51□□□□□ -1.05
CD44-223ENST00000526553 KLHL23Q8NBE8 558 aa8.51□□□□□ -1.05
CD44-223ENST00000526553 EHD4Q9H223 541 aa8.51□□□□□ -1.05
CD44-223ENST00000526553 OSGEPQ9NPF4 335 aa8.51□□□□□ -1.05
CD44-223ENST00000526553 METTL12A8MUP2 240 aa8.5□□□□□ -1.05
CD44-223ENST00000526553 TM4SF5O14894 197 aa8.5□□□□□ -1.05
CD44-223ENST00000526553 GADD45BO75293 160 aaPredicted RBP8.5□□□□□ -1.05
CD44-223ENST00000526553 PROCP04070 461 aa8.5□□□□□ -1.05
CD44-223ENST00000526553 ADGRE1Q14246 886 aa8.5□□□□□ -1.05
CD44-223ENST00000526553 GALNT11Q8NCW6 608 aa8.5□□□□□ -1.05
CD44-223ENST00000526553 EPS8L3Q8TE67 593 aaKnown RBP8.5□□□□□ -1.05
CD44-223ENST00000526553 SPOCK3Q9BQ16 436 aa8.5□□□□□ -1.05
CD44-223ENST00000526553 SEC31BQ9NQW1 1179 aa8.5□□□□□ -1.05
CD44-223ENST00000526553 NLRP2Q9NX02 1062 aa8.5□□□□□ -1.05
CD44-223ENST00000526553 TRAK1Q9UPV9 953 aa8.5□□□□□ -1.05
CD44-223ENST00000526553 A0A096LPE4 126 aa8.49□□□□□ -1.05
CD44-223ENST00000526553 A0A1W2PPZ6 126 aa8.49□□□□□ -1.05
CD44-223ENST00000526553 ZBTB7CA1YPR0 619 aa8.49□□□□□ -1.05
CD44-223ENST00000526553 MSTNO14793 375 aa8.49□□□□□ -1.05
CD44-223ENST00000526553 P4HBP07237 508 aaKnown RBP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms