RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 LARP6Q9BRS8 491 aaKnown RBP8.57□□□□□ -1.04
HDAC9-227ENST00000523867 LSG1Q9H089 658 aaKnown RBP8.57□□□□□ -1.04
HDAC9-227ENST00000523867 GNL3LQ9NVN8 582 aaKnown RBP8.57□□□□□ -1.04
HDAC9-227ENST00000523867 NRBP1Q9UHY1 535 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 FAN1Q9Y2M0 1017 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 ZBTB12Q9Y330 459 aaPredicted RBP8.57□□□□□ -1.04
HDAC9-227ENST00000523867 ATP6V1DQ9Y5K8 247 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 MAP3K5Q99683 1374 aa8.57□□□□□ -1.04
HDAC9-227ENST00000523867 CCDC196A0A1B0GTZ2 297 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 WDHD1O75717 1129 aaPredicted RBP8.56□□□□□ -1.04
HDAC9-227ENST00000523867 NLRP6P59044 892 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 MCM6Q14566 821 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 CWC27Q6UX04 472 aaKnown RBP8.56□□□□□ -1.04
HDAC9-227ENST00000523867 RASEFQ8IZ41 740 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 FRMD4BQ9Y2L6 1034 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 FAM208AQ9UK61 1670 aaKnown RBP8.56□□□□□ -1.04
HDAC9-227ENST00000523867 KIF3CO14782 793 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 FIBPO43427 364 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 STK10O94804 968 aaKnown RBP8.56□□□□□ -1.04
HDAC9-227ENST00000523867 HCLS1P14317 486 aaPredicted RBP8.56□□□□□ -1.04
HDAC9-227ENST00000523867 EIF2S2P20042 333 aaKnown RBP8.56□□□□□ -1.04
HDAC9-227ENST00000523867 LTKP29376 864 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 TDO2P48775 406 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 PSME1Q06323 249 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 ZSCAN26Q16670 478 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 FBXO38Q6PIJ6 1188 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 RUFY3Q7L099 469 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 CADPS2Q86UW7 1296 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 CACTIN-AS1Q8N1I8 211 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 LTV1Q96GA3 475 aaPredicted RBP8.56□□□□□ -1.04
HDAC9-227ENST00000523867 TACO1Q9BSH4 297 aaKnown RBP8.56□□□□□ -1.04
HDAC9-227ENST00000523867 BSDC1Q9NW68 430 aaPredicted RBP8.56□□□□□ -1.04
HDAC9-227ENST00000523867 SPG7Q9UQ90 795 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 FMN2Q9NZ56 1722 aa8.56□□□□□ -1.04
HDAC9-227ENST00000523867 F13A1P00488 732 aa8.55□□□□□ -1.04
HDAC9-227ENST00000523867 NBPF7P0C2Y1 421 aaPredicted RBP8.55□□□□□ -1.04
HDAC9-227ENST00000523867 H2AFXP16104 143 aaPredicted RBP8.55□□□□□ -1.04
HDAC9-227ENST00000523867 CASTP20810 708 aaKnown RBP8.55□□□□□ -1.04
HDAC9-227ENST00000523867 HOXC9P31274 260 aa8.55□□□□□ -1.04
HDAC9-227ENST00000523867 PROCA1Q8NCQ7 364 aaPredicted RBP8.55□□□□□ -1.04
HDAC9-227ENST00000523867 CCDC191Q8NCU4 936 aa8.55□□□□□ -1.04
HDAC9-227ENST00000523867 RNF25Q96BH1 459 aaPredicted RBP8.55□□□□□ -1.04
HDAC9-227ENST00000523867 SUFUQ9UMX1 484 aa8.55□□□□□ -1.04
HDAC9-227ENST00000523867 PPP1R12AO14974 1030 aaPredicted RBP8.55□□□□□ -1.04
HDAC9-227ENST00000523867 NRDCO43847 1150 aa8.55□□□□□ -1.04
HDAC9-227ENST00000523867 TSR1Q2NL82 804 aaKnown RBP8.55□□□□□ -1.04
HDAC9-227ENST00000523867 EP400NLQ6ZTU2 488 aa8.55□□□□□ -1.04
HDAC9-227ENST00000523867 RUFY2Q8WXA3 655 aa8.55□□□□□ -1.04
HDAC9-227ENST00000523867 UBXN4Q92575 508 aa8.55□□□□□ -1.04
HDAC9-227ENST00000523867 RRP15Q9Y3B9 282 aaKnown RBP8.55□□□□□ -1.04
HDAC9-227ENST00000523867 FHOD1Q9Y613 1164 aa8.55□□□□□ -1.04
HDAC9-227ENST00000523867 PLEKHG1Q9ULL1 1385 aa8.55□□□□□ -1.04
HDAC9-227ENST00000523867 PTPRUQ92729 1446 aa8.55□□□□□ -1.04
HDAC9-227ENST00000523867 ROBO1Q9Y6N7 1651 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 CCDC171Q6TFL3 1326 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 GLRX3O76003 335 aaKnown RBP8.54□□□□□ -1.04
HDAC9-227ENST00000523867 IVLP07476 585 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 ATP6V1AP38606 617 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 PDE4DQ08499 809 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 NUTM2GQ5VZR2 741 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 LRRC37A3O60309 1634 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 DIP2AQ14689 1571 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 TRIM66O15016 1216 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 CPA1P15085 419 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 TSGA10IPQ3SY00 556 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 CEP135Q66GS9 1140 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 MCTP2Q6DN12 878 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 CCDC83Q8IWF9 413 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 LARGE2Q8N3Y3 721 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 PPM1EQ8WY54 764 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 AK7Q96M32 723 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 TMX1Q9H3N1 280 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 HYPKQ9NX55 129 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 RGS17Q9UGC6 210 aaPredicted RBP8.54□□□□□ -1.04
HDAC9-227ENST00000523867 NUB1Q9Y5A7 615 aa8.54□□□□□ -1.04
HDAC9-227ENST00000523867 JCADQ9P266 1359 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 TTC41PQ6P2S7 1318 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 CCDC189A1A4V9 331 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 PI4KAP2A4QPH2 592 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 KIF2AO00139 706 aaPredicted RBP8.53□□□□□ -1.04
HDAC9-227ENST00000523867 CPP00450 1065 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 GJB2P29033 226 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.53□□□□□ -1.04
HDAC9-227ENST00000523867 CLASRPQ8N2M8 674 aaKnown RBP8.53□□□□□ -1.04
HDAC9-227ENST00000523867 MSL3Q8N5Y2 521 aaKnown RBP8.53□□□□□ -1.04
HDAC9-227ENST00000523867 PI4KAP1Q8N8J0 262 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 DNAAF4Q8WXU2 420 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 JAKMIP1Q96N16 626 aaKnown RBP8.53□□□□□ -1.04
HDAC9-227ENST00000523867 UBXN6Q9BZV1 441 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 PDRG1Q9NUG6 133 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 CACNA1FO60840 1977 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 TMEM94Q12767 1356 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 ELP1O95163 1332 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 SLU7O95391 586 aaKnown RBP8.53□□□□□ -1.04
HDAC9-227ENST00000523867 LARGE1O95461 756 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 DNM1Q05193 864 aaKnown RBP8.53□□□□□ -1.04
HDAC9-227ENST00000523867 BEND3Q5T5X7 828 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 VPS53Q5VIR6 699 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 PRPF40BQ6NWY9 871 aaKnown RBP8.53□□□□□ -1.04
HDAC9-227ENST00000523867 TTC30BQ8N4P2 665 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms