RNA–Protein interactions for RNA: ENST00000522746.5

FAM49B-223, Transcript of family with sequence similarity 49 member B, human

APPRIS P1 TSL 1 (best) BASIC

Gene FAM49B, Length 2,196 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FAM49B-223	ENST00000522746	KRT27	Q7Z3Y8	459 aa		19.9	■□□□□ 0.78
FAM49B-223	ENST00000522746	CCDC83	Q8IWF9	413 aa		19.9	■□□□□ 0.78
FAM49B-223	ENST00000522746	TRIM37	O94972	964 aa		19.89	■□□□□ 0.77
FAM49B-223	ENST00000522746	ME3	Q16798	604 aa		19.89	■□□□□ 0.77
FAM49B-223	ENST00000522746	CLEC4G	Q6UXB4	293 aa		19.89	■□□□□ 0.77
FAM49B-223	ENST00000522746	OSBP2	Q969R2	916 aa		19.89	■□□□□ 0.77
FAM49B-223	ENST00000522746	BCL11B	Q9C0K0	894 aa	Predicted RBP	19.89	■□□□□ 0.77
FAM49B-223	ENST00000522746	TPCN1	Q9ULQ1	816 aa		19.89	■□□□□ 0.77
FAM49B-223	ENST00000522746	MROH5	Q6ZUA9	1318 aa		19.89	■□□□□ 0.77
FAM49B-223	ENST00000522746	DTNB	O60941	627 aa		19.88	■□□□□ 0.77
FAM49B-223	ENST00000522746	ST3GAL1	Q11201	340 aa		19.88	■□□□□ 0.77
FAM49B-223	ENST00000522746	ERFE	Q4G0M1	354 aa		19.88	■□□□□ 0.77
FAM49B-223	ENST00000522746	CCDC152	Q4G0S7	254 aa		19.88	■□□□□ 0.77
FAM49B-223	ENST00000522746	RC3H1	Q5TC82	1133 aa	Known RBP	19.88	■□□□□ 0.77
FAM49B-223	ENST00000522746	ZSCAN31	Q96LW9	406 aa	Predicted RBP	19.88	■□□□□ 0.77
FAM49B-223	ENST00000522746	COL4A1	P02462	1669 aa		19.88	■□□□□ 0.77
FAM49B-223	ENST00000522746	PHKA1	P46020	1223 aa		19.88	■□□□□ 0.77
FAM49B-223	ENST00000522746	PUM3	Q15397	648 aa	Known RBP	19.88	■□□□□ 0.77
FAM49B-223	ENST00000522746	CCDC24	Q8N4L8	307 aa		19.88	■□□□□ 0.77
FAM49B-223	ENST00000522746	DSCC1	Q9BVC3	393 aa		19.88	■□□□□ 0.77
FAM49B-223	ENST00000522746	TAF1L	Q8IZX4	1826 aa		19.88	■□□□□ 0.77
FAM49B-223	ENST00000522746	SNAP23	O00161	211 aa		19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	HSPD1	P10809	573 aa	Known RBP	19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	FGFR2	P21802	821 aa		19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	KRT32	Q14532	448 aa		19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	SKOR2	Q2VWA4	1001 aa	Predicted RBP	19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	ARHGEF1	Q92888	912 aa	Known RBP	19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	MPHOSPH8	Q99549	860 aa		19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	SH2B1	Q9NRF2	756 aa	Predicted RBP	19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	TOB2	Q14106	344 aa	Predicted RBP	19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	CCDC102B	Q68D86	513 aa		19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	ZNF512B	Q96KM6	892 aa	Predicted RBP	19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	NEK1	Q96PY6	1258 aa		19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	SCN7A	Q01118	1682 aa		19.87	■□□□□ 0.77
FAM49B-223	ENST00000522746	ARAP2	Q8WZ64	1704 aa		19.86	■□□□□ 0.77
FAM49B-223	ENST00000522746		A0A0G2JLW4	131 aa		19.86	■□□□□ 0.77
FAM49B-223	ENST00000522746	WASHC4	Q2M389	1173 aa		19.86	■□□□□ 0.77
FAM49B-223	ENST00000522746	FAM196A	Q6ZSG2	479 aa		19.86	■□□□□ 0.77
FAM49B-223	ENST00000522746	NECAB1	Q8N987	351 aa		19.86	■□□□□ 0.77
FAM49B-223	ENST00000522746	LPIN2	Q92539	896 aa		19.86	■□□□□ 0.77
FAM49B-223	ENST00000522746	NARF	Q9UHQ1	456 aa		19.86	■□□□□ 0.77
FAM49B-223	ENST00000522746	RTCB	Q9Y3I0	505 aa	Known RBP	19.86	■□□□□ 0.77
FAM49B-223	ENST00000522746	RTL9	Q8NET4	1388 aa		19.86	■□□□□ 0.77
FAM49B-223	ENST00000522746	MYH7	P12883	1935 aa		19.86	■□□□□ 0.77
FAM49B-223	ENST00000522746	LRRFIP1	Q32MZ4	808 aa	Known RBP	19.85	■□□□□ 0.77
FAM49B-223	ENST00000522746	STOX1	Q6ZVD7	989 aa		19.85	■□□□□ 0.77
FAM49B-223	ENST00000522746	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	19.85	■□□□□ 0.77
FAM49B-223	ENST00000522746	LMBRD1	Q9NUN5	540 aa		19.85	■□□□□ 0.77
FAM49B-223	ENST00000522746	SMC3	Q9UQE7	1217 aa		19.85	■□□□□ 0.77
FAM49B-223	ENST00000522746	ZFY	P08048	801 aa	Predicted RBP	19.85	■□□□□ 0.77
FAM49B-223	ENST00000522746	HSP90B1	P14625	803 aa	Known RBP	19.85	■□□□□ 0.77
FAM49B-223	ENST00000522746	C4B	P0C0L5	1744 aa		19.85	■□□□□ 0.77
FAM49B-223	ENST00000522746	ARID4A	P29374	1257 aa	Predicted RBP	19.84	■□□□□ 0.77
FAM49B-223	ENST00000522746	MYO5A	Q9Y4I1	1855 aa	Known RBP	19.84	■□□□□ 0.77
FAM49B-223	ENST00000522746	IGHMBP2	P38935	993 aa	Known RBP	19.84	■□□□□ 0.77
FAM49B-223	ENST00000522746	ANKRD1	Q15327	319 aa		19.84	■□□□□ 0.77
FAM49B-223	ENST00000522746	PUS7L	Q9H0K6	701 aa	Known RBP	19.84	■□□□□ 0.77
FAM49B-223	ENST00000522746	PIH1D3	Q9NQM4	214 aa	Known RBP	19.84	■□□□□ 0.77
FAM49B-223	ENST00000522746	DDX49	Q9Y6V7	483 aa	Known RBP	19.84	■□□□□ 0.77
FAM49B-223	ENST00000522746	LAMA4	Q16363	1823 aa		19.83	■□□□□ 0.77
FAM49B-223	ENST00000522746	WDR33	Q9C0J8	1336 aa	Known RBP	19.83	■□□□□ 0.77
FAM49B-223	ENST00000522746	FOXP2	O15409	715 aa		19.83	■□□□□ 0.77
FAM49B-223	ENST00000522746	ZPR1	O75312	459 aa		19.83	■□□□□ 0.77
FAM49B-223	ENST00000522746	APPBP2	Q92624	585 aa		19.83	■□□□□ 0.77
FAM49B-223	ENST00000522746	CASZ1	Q86V15	1759 aa		19.83	■□□□□ 0.76
FAM49B-223	ENST00000522746	PRPF40A	O75400	957 aa	Known RBP	19.83	■□□□□ 0.76
FAM49B-223	ENST00000522746	SLC5A1	P13866	664 aa		19.83	■□□□□ 0.76
FAM49B-223	ENST00000522746	GJB2	P29033	226 aa		19.83	■□□□□ 0.76
FAM49B-223	ENST00000522746	SYT1	P21579	422 aa		19.82	■□□□□ 0.76
FAM49B-223	ENST00000522746	KLHL40	Q2TBA0	621 aa		19.82	■□□□□ 0.76
FAM49B-223	ENST00000522746	TTLL5	Q6EMB2	1281 aa		19.82	■□□□□ 0.76
FAM49B-223	ENST00000522746	UQCRFS1P1	P0C7P4	283 aa		19.81	■□□□□ 0.76
FAM49B-223	ENST00000522746	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	19.81	■□□□□ 0.76
FAM49B-223	ENST00000522746	FOXD4L3	Q6VB84	417 aa	Predicted RBP	19.81	■□□□□ 0.76
FAM49B-223	ENST00000522746	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	19.81	■□□□□ 0.76
FAM49B-223	ENST00000522746	TAF1	P21675	1872 aa		19.81	■□□□□ 0.76
FAM49B-223	ENST00000522746	TTF1	Q15361	905 aa	Predicted RBP	19.81	■□□□□ 0.76
FAM49B-223	ENST00000522746		Q6ZUG5	572 aa		19.81	■□□□□ 0.76
FAM49B-223	ENST00000522746	STX6	O43752	255 aa		19.8	■□□□□ 0.76
FAM49B-223	ENST00000522746	ADD2	P35612	726 aa		19.8	■□□□□ 0.76
FAM49B-223	ENST00000522746	CHRND	Q07001	517 aa		19.8	■□□□□ 0.76
FAM49B-223	ENST00000522746	LRRC2	Q9BYS8	371 aa		19.8	■□□□□ 0.76
FAM49B-223	ENST00000522746	C4A	P0C0L4	1744 aa		19.8	■□□□□ 0.76
FAM49B-223	ENST00000522746	FSD2	A1L4K1	749 aa		19.8	■□□□□ 0.76
FAM49B-223	ENST00000522746	IDH1	O75874	414 aa	Known RBP	19.8	■□□□□ 0.76
FAM49B-223	ENST00000522746	RBM6	P78332	1123 aa	Known RBP	19.8	■□□□□ 0.76
FAM49B-223	ENST00000522746	STK3	Q13188	491 aa		19.8	■□□□□ 0.76
FAM49B-223	ENST00000522746	SLC9C2	Q5TAH2	1124 aa		19.8	■□□□□ 0.76
FAM49B-223	ENST00000522746	SETDB2	Q96T68	719 aa		19.8	■□□□□ 0.76
FAM49B-223	ENST00000522746		E7EWF7	191 aa		19.79	■□□□□ 0.76
FAM49B-223	ENST00000522746	RGL2	O15211	777 aa		19.79	■□□□□ 0.76
FAM49B-223	ENST00000522746	GPAA1	O43292	621 aa		19.79	■□□□□ 0.76
FAM49B-223	ENST00000522746	ZSCAN22	P10073	491 aa	Predicted RBP	19.79	■□□□□ 0.76
FAM49B-223	ENST00000522746	GTF2E1	P29083	439 aa	Predicted RBP	19.79	■□□□□ 0.76
FAM49B-223	ENST00000522746	RFC4	P35249	363 aa		19.79	■□□□□ 0.76
FAM49B-223	ENST00000522746	RASGRF1	Q13972	1273 aa		19.79	■□□□□ 0.76
FAM49B-223	ENST00000522746	SF3B3	Q15393	1217 aa	Known RBP	19.79	■□□□□ 0.76
FAM49B-223	ENST00000522746	TRAPPC3L	Q5T215	181 aa		19.79	■□□□□ 0.76
FAM49B-223	ENST00000522746	CDC5L	Q99459	802 aa	Known RBP	19.79	■□□□□ 0.76

Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms