RNA–Protein interactions for RNA: ENST00000518385.5

SDC2-202, Transcript of syndecan 2, humanhuman

TSL 5 BASIC

Gene SDC2, Length 1,583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-202ENST00000518385 SYCE3A1L190 88 aa21.77■■□□□ 1.08
SDC2-202ENST00000518385 BICDL1Q6ZP65 573 aa21.77■■□□□ 1.08
SDC2-202ENST00000518385 DBNDD2Q9BQY9 259 aa21.77■■□□□ 1.08
SDC2-202ENST00000518385 ZNF609O15014 1411 aa21.77■■□□□ 1.07
SDC2-202ENST00000518385 TPM3P06753 285 aa21.76■■□□□ 1.07
SDC2-202ENST00000518385 KIAA2012Q0VF49 1180 aa21.76■■□□□ 1.07
SDC2-202ENST00000518385 ZNF827Q17R98 1081 aa21.76■■□□□ 1.07
SDC2-202ENST00000518385 TAF7LQ5H9L4 462 aa21.76■■□□□ 1.07
SDC2-202ENST00000518385 NYXQ9GZU5 481 aa21.76■■□□□ 1.07
SDC2-202ENST00000518385 TFCP2L1Q9NZI6 479 aa21.76■■□□□ 1.07
SDC2-202ENST00000518385 PALD1Q9ULE6 856 aa21.76■■□□□ 1.07
SDC2-202ENST00000518385 HCLS1P14317 486 aaPredicted RBP21.75■■□□□ 1.07
SDC2-202ENST00000518385 HMGN5P82970 282 aaKnown RBP21.75■■□□□ 1.07
SDC2-202ENST00000518385 PRIMPOLQ96LW4 560 aa21.75■■□□□ 1.07
SDC2-202ENST00000518385 TM6SF1Q9BZW5 370 aa21.75■■□□□ 1.07
SDC2-202ENST00000518385 SPEF2Q9C093 1822 aa21.75■■□□□ 1.07
SDC2-202ENST00000518385 ANKRD18BA2A2Z9 1011 aa21.74■■□□□ 1.07
SDC2-202ENST00000518385 GYS1P13807 737 aa21.74■■□□□ 1.07
SDC2-202ENST00000518385 EN1Q05925 392 aaPredicted RBP21.74■■□□□ 1.07
SDC2-202ENST00000518385 NMIQ13287 307 aaPredicted RBP21.74■■□□□ 1.07
SDC2-202ENST00000518385 EZH2Q15910 746 aaKnown RBP21.74■■□□□ 1.07
SDC2-202ENST00000518385 LRRC24Q50LG9 513 aa21.74■■□□□ 1.07
SDC2-202ENST00000518385 SLC10A5Q5PT55 438 aa21.74■■□□□ 1.07
SDC2-202ENST00000518385 R3HCC1Q9Y3T6 440 aaKnown RBP21.74■■□□□ 1.07
SDC2-202ENST00000518385 MYH3P11055 1940 aa21.74■■□□□ 1.07
SDC2-202ENST00000518385 CCDC171Q6TFL3 1326 aa21.74■■□□□ 1.07
SDC2-202ENST00000518385 FLAD1Q8NFF5 587 aa21.74■■□□□ 1.07
SDC2-202ENST00000518385 MAP4K1Q92918 833 aa21.74■■□□□ 1.07
SDC2-202ENST00000518385 PKNOX2Q96KN3 472 aa21.74■■□□□ 1.07
SDC2-202ENST00000518385 NEUROD6Q96NK8 337 aa21.74■■□□□ 1.07
SDC2-202ENST00000518385 SNX14Q9Y5W7 946 aa21.74■■□□□ 1.07
SDC2-202ENST00000518385 SF3B2Q13435 895 aaKnown RBP21.73■■□□□ 1.07
SDC2-202ENST00000518385 ERFEQ4G0M1 354 aa21.73■■□□□ 1.07
SDC2-202ENST00000518385 CCDC183Q5T5S1 534 aa21.73■■□□□ 1.07
SDC2-202ENST00000518385 TPTE2Q6XPS3 522 aa21.73■■□□□ 1.07
SDC2-202ENST00000518385 ZNF594Q96JF6 807 aaPredicted RBP21.73■■□□□ 1.07
SDC2-202ENST00000518385 GREM2Q9H772 168 aa21.73■■□□□ 1.07
SDC2-202ENST00000518385 RBM27Q9P2N5 1060 aaKnown RBP21.73■■□□□ 1.07
SDC2-202ENST00000518385 ABCC12Q96J65 1359 aa21.72■■□□□ 1.07
SDC2-202ENST00000518385 MED23Q9ULK4 1368 aa21.72■■□□□ 1.07
SDC2-202ENST00000518385 COL24A1Q17RW2 1714 aa21.72■■□□□ 1.07
SDC2-202ENST00000518385 A0A1B0GUL7 405 aa21.72■■□□□ 1.07
SDC2-202ENST00000518385 ZKSCAN1P17029 563 aaPredicted RBP21.72■■□□□ 1.07
SDC2-202ENST00000518385 NFIXQ14938 502 aa21.72■■□□□ 1.07
SDC2-202ENST00000518385 LRRFIP1Q32MZ4 808 aaKnown RBP21.72■■□□□ 1.07
SDC2-202ENST00000518385 NBPF5PQ86XG9 351 aaPredicted RBP21.72■■□□□ 1.07
SDC2-202ENST00000518385 KBTBD3Q8NAB2 608 aa21.72■■□□□ 1.07
SDC2-202ENST00000518385 CCDC85AQ96PX6 553 aaPredicted RBP21.72■■□□□ 1.07
SDC2-202ENST00000518385 DDX60Q8IY21 1712 aaKnown RBP21.71■■□□□ 1.07
SDC2-202ENST00000518385 UQCRHLA0A096LP55 91 aa21.71■■□□□ 1.07
SDC2-202ENST00000518385 UQCRHP07919 91 aa21.71■■□□□ 1.07
SDC2-202ENST00000518385 ITGA6P23229 1130 aa21.71■■□□□ 1.07
SDC2-202ENST00000518385 NECTIN1Q15223 517 aa21.71■■□□□ 1.07
SDC2-202ENST00000518385 CCDC158Q5M9N0 1113 aa21.71■■□□□ 1.07
SDC2-202ENST00000518385 RNF20Q5VTR2 975 aa21.71■■□□□ 1.07
SDC2-202ENST00000518385 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.71■■□□□ 1.07
SDC2-202ENST00000518385 PTMAP06454 111 aaKnown RBP21.7■■□□□ 1.06
SDC2-202ENST00000518385 GTF2E1P29083 439 aaPredicted RBP21.7■■□□□ 1.06
SDC2-202ENST00000518385 TM4SF1P30408 202 aa21.7■■□□□ 1.06
SDC2-202ENST00000518385 BAG6P46379 1132 aa21.7■■□□□ 1.06
SDC2-202ENST00000518385 COL23A1Q86Y22 540 aaPredicted RBP21.7■■□□□ 1.06
SDC2-202ENST00000518385 PUS3Q9BZE2 481 aaKnown RBP21.7■■□□□ 1.06
SDC2-202ENST00000518385 ZMYND15Q9H091 742 aa21.7■■□□□ 1.06
SDC2-202ENST00000518385 RIPOR2Q9Y4F9 1068 aa21.7■■□□□ 1.06
SDC2-202ENST00000518385 LAMB2P55268 1798 aa21.7■■□□□ 1.06
SDC2-202ENST00000518385 TIMM10P62072 90 aa21.7■■□□□ 1.06
SDC2-202ENST00000518385 FAM227BQ96M60 508 aa21.7■■□□□ 1.06
SDC2-202ENST00000518385 HMG20BQ9P0W2 317 aa21.7■■□□□ 1.06
SDC2-202ENST00000518385 CARMIL3Q8ND23 1372 aa21.69■■□□□ 1.06
SDC2-202ENST00000518385 PTH1RQ03431 593 aa21.69■■□□□ 1.06
SDC2-202ENST00000518385 CCDC152Q4G0S7 254 aa21.69■■□□□ 1.06
SDC2-202ENST00000518385 LDHAL6AQ6ZMR3 332 aa21.69■■□□□ 1.06
SDC2-202ENST00000518385 PAG1Q9NWQ8 432 aa21.69■■□□□ 1.06
SDC2-202ENST00000518385 RTL9Q8NET4 1388 aa21.69■■□□□ 1.06
SDC2-202ENST00000518385 A0A0D9SFI3 127 aa21.68■■□□□ 1.06
SDC2-202ENST00000518385 IFIT1P09914 478 aaKnown RBP21.68■■□□□ 1.06
SDC2-202ENST00000518385 PSMA5P28066 241 aa21.68■■□□□ 1.06
SDC2-202ENST00000518385 UBE2HP62256 183 aa21.68■■□□□ 1.06
SDC2-202ENST00000518385 SF3B3Q15393 1217 aaKnown RBP21.68■■□□□ 1.06
SDC2-202ENST00000518385 TSGA10IPQ3SY00 556 aa21.68■■□□□ 1.06
SDC2-202ENST00000518385 CCDC125Q86Z20 511 aa21.68■■□□□ 1.06
SDC2-202ENST00000518385 ZNF512BQ96KM6 892 aaPredicted RBP21.68■■□□□ 1.06
SDC2-202ENST00000518385 DNAJC2Q99543 621 aaKnown RBP21.68■■□□□ 1.06
SDC2-202ENST00000518385 HELLSQ9NRZ9 838 aa21.68■■□□□ 1.06
SDC2-202ENST00000518385 RPAP1Q9BWH6 1393 aaPredicted RBP21.68■■□□□ 1.06
SDC2-202ENST00000518385 KCNJ4P48050 445 aa21.67■■□□□ 1.06
SDC2-202ENST00000518385 MCMDC2Q4G0Z9 681 aa21.67■■□□□ 1.06
SDC2-202ENST00000518385 TTC14Q96N46 770 aa21.67■■□□□ 1.06
SDC2-202ENST00000518385 RBM8AQ9Y5S9 174 aaKnown RBP21.67■■□□□ 1.06
SDC2-202ENST00000518385 PNPLA7Q6ZV29 1317 aa21.66■■□□□ 1.06
SDC2-202ENST00000518385 SLC15A2Q16348 729 aa21.66■■□□□ 1.06
SDC2-202ENST00000518385 GORABQ5T7V8 394 aa21.66■■□□□ 1.06
SDC2-202ENST00000518385 RASEFQ8IZ41 740 aa21.66■■□□□ 1.06
SDC2-202ENST00000518385 PIBF1Q8WXW3 757 aa21.66■■□□□ 1.06
SDC2-202ENST00000518385 ZSWIM6Q9HCJ5 1215 aa21.66■■□□□ 1.06
SDC2-202ENST00000518385 MROH5Q6ZUA9 1318 aa21.66■■□□□ 1.06
SDC2-202ENST00000518385 GTF2F1P35269 517 aaKnown RBP eCLIP21.65■■□□□ 1.06
SDC2-202ENST00000518385 METTL24Q5JXM2 366 aa21.65■■□□□ 1.06
SDC2-202ENST00000518385 VPS53Q5VIR6 699 aa21.65■■□□□ 1.06
SDC2-202ENST00000518385 CREB3L3Q68CJ9 461 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms