RNA–Protein interactions for RNA: ENST00000489378.5

SSBP1-212, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 2

Gene SSBP1, Length 1,434 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-212ENST00000489378 TM4SF4P48230 202 aa12.26□□□□□ -0.45
SSBP1-212ENST00000489378 DOK7Q18PE1 504 aa12.26□□□□□ -0.45
SSBP1-212ENST00000489378 GIGYF2Q6Y7W6 1299 aaKnown RBP12.26□□□□□ -0.45
SSBP1-212ENST00000489378 RTF1Q92541 710 aaKnown RBP12.26□□□□□ -0.45
SSBP1-212ENST00000489378 UTP14AQ9BVJ6 771 aaKnown RBP12.26□□□□□ -0.45
SSBP1-212ENST00000489378 RSPH6AQ9H0K4 717 aa12.26□□□□□ -0.45
SSBP1-212ENST00000489378 ANKRD36CQ5JPF3 1778 aa12.26□□□□□ -0.45
SSBP1-212ENST00000489378 SCN9AQ15858 1988 aa12.25□□□□□ -0.45
SSBP1-212ENST00000489378 RBBP6Q7Z6E9 1792 aaKnown RBP12.25□□□□□ -0.45
SSBP1-212ENST00000489378 HCLS1P14317 486 aaPredicted RBP12.25□□□□□ -0.45
SSBP1-212ENST00000489378 FKBP1BP68106 108 aa12.25□□□□□ -0.45
SSBP1-212ENST00000489378 EIF4G2P78344 907 aaKnown RBP eCLIP12.25□□□□□ -0.45
SSBP1-212ENST00000489378 GRAPQ13588 217 aa12.25□□□□□ -0.45
SSBP1-212ENST00000489378 PARP10Q53GL7 1025 aa12.25□□□□□ -0.45
SSBP1-212ENST00000489378 ANGEL2Q5VTE6 544 aaKnown RBP12.25□□□□□ -0.45
SSBP1-212ENST00000489378 GRAPLQ8TC17 118 aaPredicted RBP12.25□□□□□ -0.45
SSBP1-212ENST00000489378 SCAF8Q9UPN6 1271 aaKnown RBP12.25□□□□□ -0.45
SSBP1-212ENST00000489378 LRRC37AA6NMS7 1700 aa12.25□□□□□ -0.45
SSBP1-212ENST00000489378 A0A0C4DFX4 3053 aa12.24□□□□□ -0.45
SSBP1-212ENST00000489378 ECE2O60344 883 aa12.24□□□□□ -0.45
SSBP1-212ENST00000489378 EN2P19622 333 aaPredicted RBP12.24□□□□□ -0.45
SSBP1-212ENST00000489378 TAF7Q15545 349 aaPredicted RBP12.24□□□□□ -0.45
SSBP1-212ENST00000489378 WASHC4Q2M389 1173 aa12.24□□□□□ -0.45
SSBP1-212ENST00000489378 DDX46Q7L014 1031 aaKnown RBP12.24□□□□□ -0.45
SSBP1-212ENST00000489378 SCARF1Q14162 830 aa12.23□□□□□ -0.45
SSBP1-212ENST00000489378 INTS3Q68E01 1043 aaKnown RBP12.23□□□□□ -0.45
SSBP1-212ENST00000489378 MFRPQ9BY79 579 aa12.23□□□□□ -0.45
SSBP1-212ENST00000489378 POLLQ9UGP5 575 aa12.23□□□□□ -0.45
SSBP1-212ENST00000489378 TRIM17Q9Y577 477 aa12.23□□□□□ -0.45
SSBP1-212ENST00000489378 PRAMEF18Q5VWM3 479 aa12.22□□□□□ -0.45
SSBP1-212ENST00000489378 OTOP1Q7RTM1 612 aa12.22□□□□□ -0.45
SSBP1-212ENST00000489378 ZNF710Q8N1W2 664 aa12.22□□□□□ -0.45
SSBP1-212ENST00000489378 CFHR5Q9BXR6 569 aa12.22□□□□□ -0.45
SSBP1-212ENST00000489378 NSFL1CQ9UNZ2 370 aaKnown RBP12.22□□□□□ -0.45
SSBP1-212ENST00000489378 RANBP2P49792 3224 aaKnown RBP12.21□□□□□ -0.45
SSBP1-212ENST00000489378 C6orf229H3BNL8 230 aa12.21□□□□□ -0.45
SSBP1-212ENST00000489378 PER1O15534 1290 aaPredicted RBP12.21□□□□□ -0.45
SSBP1-212ENST00000489378 ECM2O94769 699 aaPredicted RBP12.21□□□□□ -0.45
SSBP1-212ENST00000489378 VIL1P09327 827 aaKnown RBP12.21□□□□□ -0.45
SSBP1-212ENST00000489378 THUMPD2Q9BTF0 503 aaKnown RBP12.21□□□□□ -0.45
SSBP1-212ENST00000489378 STK24Q9Y6E0 443 aa12.21□□□□□ -0.45
SSBP1-212ENST00000489378 COL4A1P02462 1669 aa12.21□□□□□ -0.45
SSBP1-212ENST00000489378 DDX60Q8IY21 1712 aaKnown RBP12.21□□□□□ -0.46
SSBP1-212ENST00000489378 KDM3BQ7LBC6 1761 aa12.2□□□□□ -0.46
SSBP1-212ENST00000489378 ZNF280AP59817 542 aaPredicted RBP12.2□□□□□ -0.46
SSBP1-212ENST00000489378 GPSM2P81274 684 aa12.2□□□□□ -0.46
SSBP1-212ENST00000489378 CNGB1Q14028 1251 aaPredicted RBP12.2□□□□□ -0.46
SSBP1-212ENST00000489378 SLC17A8Q8NDX2 589 aa12.2□□□□□ -0.46
SSBP1-212ENST00000489378 H0YGN5 161 aa12.2□□□□□ -0.46
SSBP1-212ENST00000489378 HTATSF1O43719 755 aaKnown RBP12.2□□□□□ -0.46
SSBP1-212ENST00000489378 EIF4A1P60842 406 aaKnown RBP12.2□□□□□ -0.46
SSBP1-212ENST00000489378 SREBF2Q12772 1141 aa12.2□□□□□ -0.46
SSBP1-212ENST00000489378 TTLL12Q14166 644 aaPredicted RBP12.2□□□□□ -0.46
SSBP1-212ENST00000489378 TMC4Q7Z404 712 aa12.2□□□□□ -0.46
SSBP1-212ENST00000489378 LRP10Q7Z4F1 713 aa12.2□□□□□ -0.46
SSBP1-212ENST00000489378 NLRP10Q86W26 655 aa12.2□□□□□ -0.46
SSBP1-212ENST00000489378 CELF1Q92879 486 aaKnown RBP12.2□□□□□ -0.46
SSBP1-212ENST00000489378 ZNF428Q96B54 188 aa12.2□□□□□ -0.46
SSBP1-212ENST00000489378 TAOK2Q9UL54 1235 aa12.2□□□□□ -0.46
SSBP1-212ENST00000489378 COL6A3P12111 3177 aa12.19□□□□□ -0.46
SSBP1-212ENST00000489378 ARMC5Q96C12 935 aa12.19□□□□□ -0.46
SSBP1-212ENST00000489378 TIMELESSQ9UNS1 1208 aa12.19□□□□□ -0.46
SSBP1-212ENST00000489378 PTPN22Q9Y2R2 807 aa12.19□□□□□ -0.46
SSBP1-212ENST00000489378 PITPNM2Q9BZ72 1349 aa12.18□□□□□ -0.46
SSBP1-212ENST00000489378 PTPN12Q05209 780 aaKnown RBP12.18□□□□□ -0.46
SSBP1-212ENST00000489378 PDIA6Q15084 440 aa12.18□□□□□ -0.46
SSBP1-212ENST00000489378 PROSER3Q2NL68 480 aa12.18□□□□□ -0.46
SSBP1-212ENST00000489378 GPR153Q6NV75 609 aa12.18□□□□□ -0.46
SSBP1-212ENST00000489378 TBC1D16Q8TBP0 767 aa12.18□□□□□ -0.46
SSBP1-212ENST00000489378 TRMT112Q9UI30 125 aaKnown RBP12.18□□□□□ -0.46
SSBP1-212ENST00000489378 ANXA1P04083 346 aa12.17□□□□□ -0.46
SSBP1-212ENST00000489378 RSBN1LQ6PCB5 846 aaPredicted RBP12.17□□□□□ -0.46
SSBP1-212ENST00000489378 EYA3Q99504 573 aa12.17□□□□□ -0.46
SSBP1-212ENST00000489378 ZSWIM6Q9HCJ5 1215 aa12.17□□□□□ -0.46
SSBP1-212ENST00000489378 MYOZ2Q9NPC6 264 aa12.17□□□□□ -0.46
SSBP1-212ENST00000489378 SH3TC1Q8TE82 1336 aa12.17□□□□□ -0.46
SSBP1-212ENST00000489378 ZNF609O15014 1411 aa12.16□□□□□ -0.46
SSBP1-212ENST00000489378 STK25O00506 426 aa12.16□□□□□ -0.46
SSBP1-212ENST00000489378 U2AF1L5P0DN76 240 aaPredicted RBP12.16□□□□□ -0.46
SSBP1-212ENST00000489378 U2AF1Q01081 240 aaKnown RBP eCLIP12.16□□□□□ -0.46
SSBP1-212ENST00000489378 CAP1Q01518 475 aa12.16□□□□□ -0.46
SSBP1-212ENST00000489378 SPRYD7Q5W111 196 aa12.16□□□□□ -0.46
SSBP1-212ENST00000489378 AGBL3Q8NEM8 1001 aa12.16□□□□□ -0.46
SSBP1-212ENST00000489378 GMLQ99445 158 aa12.16□□□□□ -0.46
SSBP1-212ENST00000489378 ERBB4Q15303 1308 aa12.16□□□□□ -0.46
SSBP1-212ENST00000489378 PSME4Q14997 1843 aa12.15□□□□□ -0.46
SSBP1-212ENST00000489378 ALDH1A1P00352 501 aa12.15□□□□□ -0.46
SSBP1-212ENST00000489378 USP17L8P0C7I0 530 aa12.15□□□□□ -0.46
SSBP1-212ENST00000489378 PRKG1Q13976 671 aa12.15□□□□□ -0.46
SSBP1-212ENST00000489378 NBPF9Q3BBW0 867 aa12.15□□□□□ -0.46
SSBP1-212ENST00000489378 CD99L2Q8TCZ2 262 aa12.15□□□□□ -0.46
SSBP1-212ENST00000489378 PNISRQ8TF01 805 aaKnown RBP12.15□□□□□ -0.46
SSBP1-212ENST00000489378 ZC3H12CQ9C0D7 883 aaKnown RBP12.15□□□□□ -0.46
SSBP1-212ENST00000489378 TCIRG1Q13488 830 aa12.14□□□□□ -0.47
SSBP1-212ENST00000489378 RBM27Q9P2N5 1060 aaKnown RBP12.14□□□□□ -0.47
SSBP1-212ENST00000489378 DLG5Q8TDM6 1919 aa12.14□□□□□ -0.47
SSBP1-212ENST00000489378 IGF2BP3O00425 579 aaKnown RBP eCLIP12.13□□□□□ -0.47
SSBP1-212ENST00000489378 SF3B3Q15393 1217 aaKnown RBP12.13□□□□□ -0.47
SSBP1-212ENST00000489378 HSP90AB3PQ58FF7 597 aa12.13□□□□□ -0.47
SSBP1-212ENST00000489378 LDLRAD1Q5T700 205 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms