RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 KCNB2Q92953 911 aa11.39□□□□□ -0.59
SF3B1-211ENST00000487698 MINPP1Q9UNW1 487 aa11.39□□□□□ -0.59
SF3B1-211ENST00000487698 PNPLA7Q6ZV29 1317 aa11.39□□□□□ -0.59
SF3B1-211ENST00000487698 LRRC37AA6NMS7 1700 aa11.38□□□□□ -0.59
SF3B1-211ENST00000487698 ZAP70P43403 619 aa11.38□□□□□ -0.59
SF3B1-211ENST00000487698 FKBP4Q02790 459 aaKnown RBP eCLIP11.38□□□□□ -0.59
SF3B1-211ENST00000487698 CRY2Q49AN0 593 aa11.38□□□□□ -0.59
SF3B1-211ENST00000487698 ZMYM1Q5SVZ6 1142 aa11.38□□□□□ -0.59
SF3B1-211ENST00000487698 PI16Q6UXB8 463 aa11.38□□□□□ -0.59
SF3B1-211ENST00000487698 FLAD1Q8NFF5 587 aa11.38□□□□□ -0.59
SF3B1-211ENST00000487698 MAP4K1Q92918 833 aa11.38□□□□□ -0.59
SF3B1-211ENST00000487698 CAMKK2Q96RR4 588 aa11.38□□□□□ -0.59
SF3B1-211ENST00000487698 HELLSQ9NRZ9 838 aa11.38□□□□□ -0.59
SF3B1-211ENST00000487698 ZNF804BA4D1E1 1349 aa11.37□□□□□ -0.59
SF3B1-211ENST00000487698 COL11A2P13942 1736 aaPredicted RBP11.37□□□□□ -0.59
SF3B1-211ENST00000487698 NPHP1O15259 732 aa11.37□□□□□ -0.59
SF3B1-211ENST00000487698 RNF113AO15541 343 aaKnown RBP11.37□□□□□ -0.59
SF3B1-211ENST00000487698 ST5P78524 1137 aa11.37□□□□□ -0.59
SF3B1-211ENST00000487698 UBE4AQ14139 1066 aa11.37□□□□□ -0.59
SF3B1-211ENST00000487698 NECTIN1Q15223 517 aa11.37□□□□□ -0.59
SF3B1-211ENST00000487698 MCMDC2Q4G0Z9 681 aa11.37□□□□□ -0.59
SF3B1-211ENST00000487698 SNX14Q9Y5W7 946 aa11.37□□□□□ -0.59
SF3B1-211ENST00000487698 K7ELQ4 463 aaPredicted RBP11.36□□□□□ -0.59
SF3B1-211ENST00000487698 CYP2E1P05181 493 aaPredicted RBP11.36□□□□□ -0.59
SF3B1-211ENST00000487698 NLGN1Q8N2Q7 840 aa11.36□□□□□ -0.59
SF3B1-211ENST00000487698 SEC62Q99442 399 aaKnown RBP11.36□□□□□ -0.59
SF3B1-211ENST00000487698 HMG20BQ9P0W2 317 aa11.36□□□□□ -0.59
SF3B1-211ENST00000487698 RBM8AQ9Y5S9 174 aaKnown RBP11.36□□□□□ -0.59
SF3B1-211ENST00000487698 LTBP1Q14766 1721 aa11.36□□□□□ -0.59
SF3B1-211ENST00000487698 KLRG2A4D1S0 409 aaPredicted RBP11.36□□□□□ -0.59
SF3B1-211ENST00000487698 ZFYP08048 801 aaPredicted RBP11.36□□□□□ -0.59
SF3B1-211ENST00000487698 GRAPQ13588 217 aa11.36□□□□□ -0.59
SF3B1-211ENST00000487698 RASGRF1Q13972 1273 aa11.36□□□□□ -0.59
SF3B1-211ENST00000487698 RASEFQ8IZ41 740 aa11.36□□□□□ -0.59
SF3B1-211ENST00000487698 IL27Q8NEV9 243 aa11.36□□□□□ -0.59
SF3B1-211ENST00000487698 GRAPLQ8TC17 118 aaPredicted RBP11.36□□□□□ -0.59
SF3B1-211ENST00000487698 MAST3O60307 1309 aa11.36□□□□□ -0.59
SF3B1-211ENST00000487698 ST18O60284 1047 aa11.35□□□□□ -0.59
SF3B1-211ENST00000487698 TTF1Q15361 905 aaPredicted RBP11.35□□□□□ -0.59
SF3B1-211ENST00000487698 LRRFIP1Q32MZ4 808 aaKnown RBP11.35□□□□□ -0.59
SF3B1-211ENST00000487698 SLFNL1Q499Z3 407 aa11.35□□□□□ -0.59
SF3B1-211ENST00000487698 SPATA5Q8NB90 893 aa11.35□□□□□ -0.59
SF3B1-211ENST00000487698 ANKRD2Q9GZV1 360 aa11.35□□□□□ -0.59
SF3B1-211ENST00000487698 PIH1D3Q9NQM4 214 aaKnown RBP11.35□□□□□ -0.59
SF3B1-211ENST00000487698 COL1A1P02452 1464 aaPredicted RBP11.35□□□□□ -0.59
SF3B1-211ENST00000487698 LAMA4Q16363 1823 aa11.35□□□□□ -0.59
SF3B1-211ENST00000487698 WTIPA6NIX2 430 aaPredicted RBP11.35□□□□□ -0.59
SF3B1-211ENST00000487698 BCAMP50895 628 aa11.35□□□□□ -0.59
SF3B1-211ENST00000487698 EZH2Q15910 746 aaKnown RBP11.35□□□□□ -0.59
SF3B1-211ENST00000487698 CCDC129Q6ZRS4 1044 aa11.35□□□□□ -0.59
SF3B1-211ENST00000487698 ANO8Q9HCE9 1232 aaPredicted RBP11.35□□□□□ -0.59
SF3B1-211ENST00000487698 IRS2Q9Y4H2 1338 aa11.35□□□□□ -0.59
SF3B1-211ENST00000487698 HOXA10P31260 410 aaPredicted RBP11.34□□□□□ -0.59
SF3B1-211ENST00000487698 NEK4P51957 841 aa11.34□□□□□ -0.59
SF3B1-211ENST00000487698 EN1Q05925 392 aaPredicted RBP11.34□□□□□ -0.59
SF3B1-211ENST00000487698 CREB3L3Q68CJ9 461 aa11.34□□□□□ -0.59
SF3B1-211ENST00000487698 PRPF40BQ6NWY9 871 aaKnown RBP11.34□□□□□ -0.59
SF3B1-211ENST00000487698 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.34□□□□□ -0.59
SF3B1-211ENST00000487698 RPAP1Q9BWH6 1393 aaPredicted RBP11.34□□□□□ -0.59
SF3B1-211ENST00000487698 M0R2C6 588 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 DDIT3P35638 169 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 SLC15A2Q16348 729 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 APPBP2Q92624 585 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 RPGRQ92834 1020 aaKnown RBP11.33□□□□□ -0.6
SF3B1-211ENST00000487698 OSBP2Q969R2 916 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 MAST2Q6P0Q8 1798 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 CACNA1SQ13698 1873 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 SLC27A2O14975 620 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 ZBTB22O15209 634 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 ADD2P35612 726 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 TSGA10IPQ3SY00 556 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 ZSCAN25Q6NSZ9 544 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 DSCC1Q9BVC3 393 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 TM6SF1Q9BZW5 370 aa11.33□□□□□ -0.6
SF3B1-211ENST00000487698 SLKQ9H2G2 1235 aaPredicted RBP11.33□□□□□ -0.6
SF3B1-211ENST00000487698 GYG1P46976 350 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 UBE3CQ15386 1083 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 FBXO33Q7Z6M2 555 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 FAM84BQ96KN1 310 aaPredicted RBP11.32□□□□□ -0.6
SF3B1-211ENST00000487698 TTC14Q96N46 770 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 UPF3BQ9BZI7 483 aaKnown RBP11.32□□□□□ -0.6
SF3B1-211ENST00000487698 KIAA1551Q9HCM1 1747 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 U3KPZ7 1027 aaPredicted RBP11.32□□□□□ -0.6
SF3B1-211ENST00000487698 PDS5AQ29RF7 1337 aaKnown RBP11.32□□□□□ -0.6
SF3B1-211ENST00000487698 TCRBV5S4A2TA0A5A2 114 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 MMP10P09238 476 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 ZKSCAN1P17029 563 aaPredicted RBP11.32□□□□□ -0.6
SF3B1-211ENST00000487698 KLRK1P26718 216 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 KCNJ4P48050 445 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 MCM2P49736 904 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 ADCK5Q3MIX3 580 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 VPS53Q5VIR6 699 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 RNF20Q5VTR2 975 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 SLC51AQ86UW1 340 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 RBM17Q96I25 401 aaKnown RBP11.32□□□□□ -0.6
SF3B1-211ENST00000487698 CRAMP1Q96RY5 1269 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 BRIP1Q9BX63 1249 aa11.32□□□□□ -0.6
SF3B1-211ENST00000487698 FOXP2O15409 715 aa11.31□□□□□ -0.6
SF3B1-211ENST00000487698 HSPD1P10809 573 aaKnown RBP11.31□□□□□ -0.6
SF3B1-211ENST00000487698 PDE6AP16499 860 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 189.9 ms