RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 PI16Q6UXB8 463 aa6.21□□□□□ -1.42
PTCD3-216ENST00000487043 EPS8L3Q8TE67 593 aaKnown RBP6.21□□□□□ -1.42
PTCD3-216ENST00000487043 CCDC74AQ96AQ1 378 aa6.21□□□□□ -1.42
PTCD3-216ENST00000487043 PSMG3-AS1Q96PY0 264 aa6.21□□□□□ -1.42
PTCD3-216ENST00000487043 KRTAP4-8Q9BYQ9 185 aa6.21□□□□□ -1.42
PTCD3-216ENST00000487043 KCNMB2Q9Y691 235 aa6.21□□□□□ -1.42
PTCD3-216ENST00000487043 PHACTR2O75167 634 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 CTSHP09668 335 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 SFSWAPQ12872 951 aaKnown RBP6.2□□□□□ -1.42
PTCD3-216ENST00000487043 RSPO4Q2I0M5 234 aaPredicted RBP6.2□□□□□ -1.42
PTCD3-216ENST00000487043 XKR5Q6UX68 686 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 SNX29Q8TEQ0 813 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 CEP63Q96MT8 703 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 NACC1Q96RE7 527 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 SLC30A3Q99726 388 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 MDFIQ99750 246 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 CCSER2Q9H7U1 834 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 ELP3Q9H9T3 547 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 ZFYVE28Q9HCC9 887 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 TPSG1Q9NRR2 321 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 NLRP2Q9NX02 1062 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 TMEM63CQ9P1W3 806 aa6.2□□□□□ -1.42
PTCD3-216ENST00000487043 RB1CC1Q8TDY2 1594 aa6.19□□□□□ -1.42
PTCD3-216ENST00000487043 ADARB2-AS1A8MUL3 147 aa6.19□□□□□ -1.42
PTCD3-216ENST00000487043 POLR3DP05423 398 aaPredicted RBP6.19□□□□□ -1.42
PTCD3-216ENST00000487043 EPB42P16452 691 aa6.19□□□□□ -1.42
PTCD3-216ENST00000487043 SF3A1Q15459 793 aaKnown RBP6.19□□□□□ -1.42
PTCD3-216ENST00000487043 PDE12Q6L8Q7 609 aaKnown RBP6.19□□□□□ -1.42
PTCD3-216ENST00000487043 RAB44Q7Z6P3 723 aaPredicted RBP6.19□□□□□ -1.42
PTCD3-216ENST00000487043 CRELD1Q96HD1 420 aa6.19□□□□□ -1.42
PTCD3-216ENST00000487043 TGIF2Q9GZN2 237 aa6.19□□□□□ -1.42
PTCD3-216ENST00000487043 CAPN10Q9HC96 672 aa6.19□□□□□ -1.42
PTCD3-216ENST00000487043 XYLBO75191 536 aa6.18□□□□□ -1.42
PTCD3-216ENST00000487043 ALBP02768 609 aa6.18□□□□□ -1.42
PTCD3-216ENST00000487043 ADH7P40394 386 aa6.18□□□□□ -1.42
PTCD3-216ENST00000487043 TYRO3Q06418 890 aa6.18□□□□□ -1.42
PTCD3-216ENST00000487043 SPEM2Q0P670 501 aa6.18□□□□□ -1.42
PTCD3-216ENST00000487043 C8orf86Q6ZUL3 223 aa6.18□□□□□ -1.42
PTCD3-216ENST00000487043 OSBPL7Q9BZF2 842 aa6.18□□□□□ -1.42
PTCD3-216ENST00000487043 ACBD3Q9H3P7 528 aa6.18□□□□□ -1.42
PTCD3-216ENST00000487043 C12orf49Q9H741 205 aa6.18□□□□□ -1.42
PTCD3-216ENST00000487043 GADD45BO75293 160 aaPredicted RBP6.17□□□□□ -1.42
PTCD3-216ENST00000487043 GRNP28799 593 aaKnown RBP6.17□□□□□ -1.42
PTCD3-216ENST00000487043 GRIK4Q16099 956 aa6.17□□□□□ -1.42
PTCD3-216ENST00000487043 NKAPLQ5M9Q1 402 aa6.17□□□□□ -1.42
PTCD3-216ENST00000487043 TRAPPC3LQ5T215 181 aa6.17□□□□□ -1.42
PTCD3-216ENST00000487043 MICALL1Q8N3F8 863 aa6.17□□□□□ -1.42
PTCD3-216ENST00000487043 C1orf127Q8N9H9 656 aa6.17□□□□□ -1.42
PTCD3-216ENST00000487043 TNFRSF25Q93038 417 aa6.17□□□□□ -1.42
PTCD3-216ENST00000487043 NPHS2Q9NP85 383 aa6.17□□□□□ -1.42
PTCD3-216ENST00000487043 BRD7Q9NPI1 651 aa6.17□□□□□ -1.42
PTCD3-216ENST00000487043 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.17□□□□□ -1.42
PTCD3-216ENST00000487043 STARD13Q9Y3M8 1113 aa6.17□□□□□ -1.42
PTCD3-216ENST00000487043 GIPC1O14908 333 aa6.16□□□□□ -1.42
PTCD3-216ENST00000487043 EREGO14944 169 aa6.16□□□□□ -1.42
PTCD3-216ENST00000487043 DYRK3O43781 588 aa6.16□□□□□ -1.42
PTCD3-216ENST00000487043 TBC1D8BQ0IIM8 1120 aa6.16□□□□□ -1.42
PTCD3-216ENST00000487043 ZNF394Q53GI3 561 aa6.16□□□□□ -1.42
PTCD3-216ENST00000487043 NXPE4Q6UWF7 544 aa6.16□□□□□ -1.42
PTCD3-216ENST00000487043 UBXN4Q92575 508 aa6.16□□□□□ -1.42
PTCD3-216ENST00000487043 TINF2Q9BSI4 451 aa6.16□□□□□ -1.42
PTCD3-216ENST00000487043 CHRDQ9H2X0 955 aa6.16□□□□□ -1.42
PTCD3-216ENST00000487043 PRDM6Q9NQX0 595 aa6.16□□□□□ -1.42
PTCD3-216ENST00000487043 CNTN3Q9P232 1028 aa6.16□□□□□ -1.42
PTCD3-216ENST00000487043 USP17L7P0C7H9 530 aa6.15□□□□□ -1.42
PTCD3-216ENST00000487043 TNNI2P48788 182 aa6.15□□□□□ -1.42
PTCD3-216ENST00000487043 MEI1Q5TIA1 1274 aa6.15□□□□□ -1.42
PTCD3-216ENST00000487043 TTC39BQ5VTQ0 682 aaPredicted RBP6.15□□□□□ -1.42
PTCD3-216ENST00000487043 NLRP13Q86W25 1043 aa6.15□□□□□ -1.42
PTCD3-216ENST00000487043 BCO2Q9BYV7 579 aa6.15□□□□□ -1.42
PTCD3-216ENST00000487043 TANGO6Q9C0B7 1094 aa6.15□□□□□ -1.42
PTCD3-216ENST00000487043 IGFLR1Q9H665 355 aa6.15□□□□□ -1.42
PTCD3-216ENST00000487043 ABI2Q9NYB9 513 aaPredicted RBP6.15□□□□□ -1.42
PTCD3-216ENST00000487043 FAM8A1Q9UBU6 413 aa6.15□□□□□ -1.42
PTCD3-216ENST00000487043 KCNH4Q9UQ05 1017 aa6.15□□□□□ -1.42
PTCD3-216ENST00000487043 PCDHGB7Q9Y5F8 929 aa6.15□□□□□ -1.42
PTCD3-216ENST00000487043 USP31Q70CQ4 1352 aa6.15□□□□□ -1.43
PTCD3-216ENST00000487043 LILRB5O75023 590 aa6.14□□□□□ -1.43
PTCD3-216ENST00000487043 NID1P14543 1247 aa6.14□□□□□ -1.43
PTCD3-216ENST00000487043 CES1P23141 567 aa6.14□□□□□ -1.43
PTCD3-216ENST00000487043 GNL2Q13823 731 aaKnown RBP6.14□□□□□ -1.43
PTCD3-216ENST00000487043 COL9A3Q14050 684 aaPredicted RBP6.14□□□□□ -1.43
PTCD3-216ENST00000487043 TAF1CQ15572 869 aaPredicted RBP6.14□□□□□ -1.43
PTCD3-216ENST00000487043 HS2ST1Q7LGA3 356 aa6.14□□□□□ -1.43
PTCD3-216ENST00000487043 KRT25Q7Z3Z0 450 aa6.14□□□□□ -1.43
PTCD3-216ENST00000487043 USP48Q86UV5 1035 aa6.14□□□□□ -1.43
PTCD3-216ENST00000487043 GALNT12Q8IXK2 581 aa6.14□□□□□ -1.43
PTCD3-216ENST00000487043 ZNF654Q8IZM8 581 aa6.14□□□□□ -1.43
PTCD3-216ENST00000487043 BHMTQ93088 406 aa6.14□□□□□ -1.43
PTCD3-216ENST00000487043 UBE2OQ9C0C9 1292 aaKnown RBP6.14□□□□□ -1.43
PTCD3-216ENST00000487043 ZFP64Q9NPA5 681 aa6.14□□□□□ -1.43
PTCD3-216ENST00000487043 GGT7Q9UJ14 662 aa6.14□□□□□ -1.43
PTCD3-216ENST00000487043 C9orf172C9J069 976 aa6.13□□□□□ -1.43
PTCD3-216ENST00000487043 SASH3O75995 380 aa6.13□□□□□ -1.43
PTCD3-216ENST00000487043 EGFRP00533 1210 aa6.13□□□□□ -1.43
PTCD3-216ENST00000487043 KCNQ4P56696 695 aa6.13□□□□□ -1.43
PTCD3-216ENST00000487043 RACK1P63244 317 aaKnown RBP6.13□□□□□ -1.43
PTCD3-216ENST00000487043 FOXD4L6Q3SYB3 417 aaPredicted RBP6.13□□□□□ -1.43
PTCD3-216ENST00000487043 PRSS36Q5K4E3 855 aa6.13□□□□□ -1.43
PTCD3-216ENST00000487043 FOXD4L3Q6VB84 417 aaPredicted RBP6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms