RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 TAF1LQ8IZX4 1826 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 KCNQ3O43525 872 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 DXOO77932 396 aaKnown RBP8.04□□□□□ -1.12
PTCD3-215ENST00000484203 TMPOP42166 694 aaKnown RBP8.04□□□□□ -1.12
PTCD3-215ENST00000484203 EIF4A1P60842 406 aaKnown RBP8.04□□□□□ -1.12
PTCD3-215ENST00000484203 DCTN1Q14203 1278 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 PPP2R2DQ66LE6 453 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 KIF6Q6ZMV9 814 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 BICDL1Q6ZP65 573 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 NBPF5PQ86XG9 351 aaPredicted RBP8.04□□□□□ -1.12
PTCD3-215ENST00000484203 C2CD5Q86YS7 1000 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 ANKLE1Q8NAG6 615 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 CNKSR1Q969H4 720 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 PRKD2Q9BZL6 878 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 TSPYL4Q9UJ04 414 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 FCF1Q9Y324 198 aaKnown RBP8.04□□□□□ -1.12
PTCD3-215ENST00000484203 ADAMTS7Q9UKP4 1686 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 UBR3Q6ZT12 1888 aa8.04□□□□□ -1.12
PTCD3-215ENST00000484203 ADCY9O60503 1353 aa8.03□□□□□ -1.12
PTCD3-215ENST00000484203 TBC1D9BQ66K14 1250 aa8.03□□□□□ -1.12
PTCD3-215ENST00000484203 DESI1Q6ICB0 168 aa8.03□□□□□ -1.12
PTCD3-215ENST00000484203 Q6ZNB5 142 aa8.03□□□□□ -1.12
PTCD3-215ENST00000484203 CCDC24Q8N4L8 307 aa8.03□□□□□ -1.12
PTCD3-215ENST00000484203 HELBQ8NG08 1087 aaPredicted RBP8.03□□□□□ -1.12
PTCD3-215ENST00000484203 NYXQ9GZU5 481 aa8.03□□□□□ -1.12
PTCD3-215ENST00000484203 PRKRIP1Q9H875 184 aaPredicted RBP8.03□□□□□ -1.12
PTCD3-215ENST00000484203 ATP10DQ9P241 1426 aa8.03□□□□□ -1.12
PTCD3-215ENST00000484203 KDM2BQ8NHM5 1336 aa8.03□□□□□ -1.12
PTCD3-215ENST00000484203 HOXB7P09629 217 aa8.02□□□□□ -1.13
PTCD3-215ENST00000484203 GTF2E1P29083 439 aaPredicted RBP8.02□□□□□ -1.13
PTCD3-215ENST00000484203 CHRNA5P30532 468 aa8.02□□□□□ -1.13
PTCD3-215ENST00000484203 RFC5P40937 340 aa8.02□□□□□ -1.13
PTCD3-215ENST00000484203 STYK1Q6J9G0 422 aa8.02□□□□□ -1.13
PTCD3-215ENST00000484203 PRR5LQ6MZQ0 368 aa8.02□□□□□ -1.13
PTCD3-215ENST00000484203 WWC3Q9ULE0 1092 aa8.02□□□□□ -1.13
PTCD3-215ENST00000484203 NIP7Q9Y221 180 aaKnown RBP eCLIP8.02□□□□□ -1.13
PTCD3-215ENST00000484203 SCN11AQ9UI33 1791 aa8.02□□□□□ -1.13
PTCD3-215ENST00000484203 TUBGCP6Q96RT7 1819 aa8.01□□□□□ -1.13
PTCD3-215ENST00000484203 AP1G2O75843 785 aa8.01□□□□□ -1.13
PTCD3-215ENST00000484203 NPR1P16066 1061 aa8.01□□□□□ -1.13
PTCD3-215ENST00000484203 LMNB1P20700 586 aa8.01□□□□□ -1.13
PTCD3-215ENST00000484203 C9orf131Q5VYM1 1079 aa8.01□□□□□ -1.13
PTCD3-215ENST00000484203 NBPF10Q6P3W6 841 aaKnown RBP8.01□□□□□ -1.13
PTCD3-215ENST00000484203 NBPF15Q8N660 670 aa8.01□□□□□ -1.13
PTCD3-215ENST00000484203 ZNF622Q969S3 477 aaKnown RBP eCLIP8.01□□□□□ -1.137e-20■□□□□ 8.5
PTCD3-215ENST00000484203 MASTLQ96GX5 879 aa8.01□□□□□ -1.13
PTCD3-215ENST00000484203 NUDT12Q9BQG2 462 aa8.01□□□□□ -1.13
PTCD3-215ENST00000484203 MIS18AQ9NYP9 233 aa8.01□□□□□ -1.13
PTCD3-215ENST00000484203 MAP3K15Q6ZN16 1313 aa8.01□□□□□ -1.13
PTCD3-215ENST00000484203 C4AP0C0L4 1744 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 COL5A3P25940 1745 aaPredicted RBP8□□□□□ -1.13
PTCD3-215ENST00000484203 KLRG2A4D1S0 409 aaPredicted RBP8□□□□□ -1.13
PTCD3-215ENST00000484203 CHL1O00533 1208 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 SRGNP10124 158 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 ALDH1B1P30837 517 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 CTDSPL2Q05D32 466 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 PTPRNQ16849 979 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 PARP10Q53GL7 1025 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 HSP90AB3PQ58FF7 597 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 LYPD8Q6UX82 237 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 C16orf71Q8IYS4 520 aaPredicted RBP8□□□□□ -1.13
PTCD3-215ENST00000484203 RNF181Q9P0P0 153 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 ADAMTS8Q9UP79 889 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 RRP7AQ9Y3A4 280 aaKnown RBP8□□□□□ -1.13
PTCD3-215ENST00000484203 RNF123Q5XPI4 1314 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 LTBP3Q9NS15 1303 aa8□□□□□ -1.13
PTCD3-215ENST00000484203 IBTKQ9P2D0 1353 aaPredicted RBP7.99□□□□□ -1.13
PTCD3-215ENST00000484203 SENP3-EIF4A1A0A087X0R7 540 aa7.99□□□□□ -1.13
PTCD3-215ENST00000484203 PRAMEF22A3QJZ6 481 aa7.99□□□□□ -1.13
PTCD3-215ENST00000484203 GFRA3O60609 400 aa7.99□□□□□ -1.13
PTCD3-215ENST00000484203 TOMM70O94826 608 aa7.99□□□□□ -1.13
PTCD3-215ENST00000484203 CCNYL3P0C7X3 344 aa7.99□□□□□ -1.13
PTCD3-215ENST00000484203 PLA2G2CQ5R387 149 aa7.99□□□□□ -1.13
PTCD3-215ENST00000484203 CC2D2BQ6DHV5 1058 aa7.99□□□□□ -1.13
PTCD3-215ENST00000484203 PPP1R42Q7Z4L9 355 aa7.99□□□□□ -1.13
PTCD3-215ENST00000484203 RTKN2Q8IZC4 609 aa7.99□□□□□ -1.13
PTCD3-215ENST00000484203 THUMPD2Q9BTF0 503 aaKnown RBP7.99□□□□□ -1.13
PTCD3-215ENST00000484203 TMX4Q9H1E5 349 aaPredicted RBP7.99□□□□□ -1.13
PTCD3-215ENST00000484203 TJP1Q07157 1748 aa7.98□□□□□ -1.13
PTCD3-215ENST00000484203 ZBTB24O43167 697 aaPredicted RBP7.98□□□□□ -1.13
PTCD3-215ENST00000484203 ANP32CO43423 234 aa7.98□□□□□ -1.13
PTCD3-215ENST00000484203 HSP90B1P14625 803 aaKnown RBP7.98□□□□□ -1.13
PTCD3-215ENST00000484203 MYL6BP14649 208 aa7.98□□□□□ -1.13
PTCD3-215ENST00000484203 GNAI1P63096 354 aa7.98□□□□□ -1.13
PTCD3-215ENST00000484203 TMEM259Q4ZIN3 620 aa7.98□□□□□ -1.13
PTCD3-215ENST00000484203 ZNF526Q8TF50 670 aaPredicted RBP7.98□□□□□ -1.13
PTCD3-215ENST00000484203 TAOK3Q9H2K8 898 aa7.98□□□□□ -1.13
PTCD3-215ENST00000484203 DDX21Q9NR30 783 aaKnown RBP eCLIP7.98□□□□□ -1.13
PTCD3-215ENST00000484203 DBF4Q9UBU7 674 aaPredicted RBP7.98□□□□□ -1.13
PTCD3-215ENST00000484203 MYH14Q7Z406 1995 aaKnown RBP7.97□□□□□ -1.13
PTCD3-215ENST00000484203 EIF2S2P20042 333 aaKnown RBP7.97□□□□□ -1.13
PTCD3-215ENST00000484203 CTHP32929 405 aa7.97□□□□□ -1.13
PTCD3-215ENST00000484203 PIP4K2AP48426 406 aaPredicted RBP7.97□□□□□ -1.13
PTCD3-215ENST00000484203 FSTL1Q12841 308 aa7.97□□□□□ -1.13
PTCD3-215ENST00000484203 CCDC93Q567U6 631 aa7.97□□□□□ -1.13
PTCD3-215ENST00000484203 PRPF40BQ6NWY9 871 aaKnown RBP7.97□□□□□ -1.13
PTCD3-215ENST00000484203 CCDC146Q8IYE0 955 aa7.97□□□□□ -1.13
PTCD3-215ENST00000484203 NGEFQ8N5V2 710 aa7.97□□□□□ -1.13
PTCD3-215ENST00000484203 EVA1BQ9NVM1 165 aa7.97□□□□□ -1.13
PTCD3-215ENST00000484203 IFT57Q9NWB7 429 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms