RNA–Protein interactions for RNA: ENST00000475540.1

SMC5-203, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-203ENST00000475540 ZSCAN29Q8IWY8 852 aaPredicted RBP11.7□□□□□ -0.54
SMC5-203ENST00000475540 ALKBH8Q96BT7 664 aaKnown RBP11.7□□□□□ -0.54
SMC5-203ENST00000475540 PDE2AO00408 941 aaPredicted RBP11.69□□□□□ -0.54
SMC5-203ENST00000475540 IGHA2P01877 340 aa11.69□□□□□ -0.54
SMC5-203ENST00000475540 ACPPP15309 386 aa11.69□□□□□ -0.54
SMC5-203ENST00000475540 PTPRAP18433 802 aa11.69□□□□□ -0.54
SMC5-203ENST00000475540 CDC27P30260 824 aa11.69□□□□□ -0.54
SMC5-203ENST00000475540 FMR1NBQ8N0W7 255 aaPredicted RBP11.69□□□□□ -0.54
SMC5-203ENST00000475540 DNAJC25Q9H1X3 360 aa11.69□□□□□ -0.54
SMC5-203ENST00000475540 PPME1Q9Y570 386 aa11.69□□□□□ -0.54
SMC5-203ENST00000475540 NFKBIEO00221 500 aa11.68□□□□□ -0.54
SMC5-203ENST00000475540 TRPA1O75762 1119 aa11.68□□□□□ -0.54
SMC5-203ENST00000475540 ELNP15502 786 aa11.68□□□□□ -0.54
SMC5-203ENST00000475540 PLCB3Q01970 1234 aa11.68□□□□□ -0.54
SMC5-203ENST00000475540 GRIK4Q16099 956 aa11.68□□□□□ -0.54
SMC5-203ENST00000475540 PLA2G4EQ3MJ16 856 aa11.68□□□□□ -0.54
SMC5-203ENST00000475540 HOMEZQ8IX15 550 aa11.68□□□□□ -0.54
SMC5-203ENST00000475540 GALNT12Q8IXK2 581 aa11.68□□□□□ -0.54
SMC5-203ENST00000475540 NACC1Q96RE7 527 aa11.68□□□□□ -0.54
SMC5-203ENST00000475540 ZKSCAN3Q9BRR0 538 aa11.68□□□□□ -0.54
SMC5-203ENST00000475540 EIF1AYO14602 144 aaKnown RBP11.67□□□□□ -0.54
SMC5-203ENST00000475540 USPL1Q5W0Q7 1092 aa11.67□□□□□ -0.54
SMC5-203ENST00000475540 FBXO11Q86XK2 927 aa11.67□□□□□ -0.54
SMC5-203ENST00000475540 TMEM102Q8N9M5 508 aaPredicted RBP11.67□□□□□ -0.54
SMC5-203ENST00000475540 SND1Q7KZF4 910 aaKnown RBP eCLIP11.66□□□□□ -0.54
SMC5-203ENST00000475540 NXPE3Q969Y0 559 aa11.66□□□□□ -0.54
SMC5-203ENST00000475540 CSRNP1Q96S65 589 aa11.66□□□□□ -0.54
SMC5-203ENST00000475540 ADAM19Q9H013 955 aa11.66□□□□□ -0.54
SMC5-203ENST00000475540 PEAR1Q5VY43 1037 aaPredicted RBP11.65□□□□□ -0.54
SMC5-203ENST00000475540 MAP4K3Q8IVH8 894 aa11.65□□□□□ -0.54
SMC5-203ENST00000475540 SRA1Q9HD15 236 aaKnown RBP11.65□□□□□ -0.54
SMC5-203ENST00000475540 LATS2Q9NRM7 1088 aa11.65□□□□□ -0.54
SMC5-203ENST00000475540 C1QTNF9BB2RNN3 333 aa11.64□□□□□ -0.55
SMC5-203ENST00000475540 LINC01387J3KSC0 135 aa11.64□□□□□ -0.55
SMC5-203ENST00000475540 CABP4P57796 275 aa11.64□□□□□ -0.55
SMC5-203ENST00000475540 FAM117BQ6P1L5 589 aa11.64□□□□□ -0.55
SMC5-203ENST00000475540 ASB16Q96NS5 453 aa11.64□□□□□ -0.55
SMC5-203ENST00000475540 HHIPQ96QV1 700 aa11.64□□□□□ -0.55
SMC5-203ENST00000475540 SH2B1Q9NRF2 756 aaPredicted RBP11.64□□□□□ -0.55
SMC5-203ENST00000475540 C9orf172C9J069 976 aa11.63□□□□□ -0.55
SMC5-203ENST00000475540 TREHO43280 583 aa11.63□□□□□ -0.55
SMC5-203ENST00000475540 CDC25BP30305 580 aa11.63□□□□□ -0.55
SMC5-203ENST00000475540 DSC3Q14574 896 aa11.63□□□□□ -0.55
SMC5-203ENST00000475540 GPAT2Q6NUI2 795 aa11.63□□□□□ -0.55
SMC5-203ENST00000475540 CD163Q86VB7 1156 aa11.63□□□□□ -0.55
SMC5-203ENST00000475540 DCAF11Q8TEB1 546 aa11.63□□□□□ -0.55
SMC5-203ENST00000475540 CCDC74AQ96AQ1 378 aa11.63□□□□□ -0.55
SMC5-203ENST00000475540 A0A1W2PP55 124 aa11.62□□□□□ -0.55
SMC5-203ENST00000475540 DEAF1O75398 565 aaPredicted RBP11.62□□□□□ -0.55
SMC5-203ENST00000475540 IGHA1P01876 353 aa11.62□□□□□ -0.55
SMC5-203ENST00000475540 SETDB1Q15047 1291 aa11.62□□□□□ -0.55
SMC5-203ENST00000475540 ADAMTSL4Q6UY14 1074 aa11.62□□□□□ -0.55
SMC5-203ENST00000475540 ASAP3Q8TDY4 903 aa11.62□□□□□ -0.55
SMC5-203ENST00000475540 CHRNA4P43681 627 aa11.61□□□□□ -0.55
SMC5-203ENST00000475540 KIAA0319Q5VV43 1072 aa11.61□□□□□ -0.55
SMC5-203ENST00000475540 BSNDQ8WZ55 320 aa11.61□□□□□ -0.55
SMC5-203ENST00000475540 LIN7BQ9HAP6 207 aa11.61□□□□□ -0.55
SMC5-203ENST00000475540 EPHA1P21709 976 aa11.6□□□□□ -0.55
SMC5-203ENST00000475540 NRG1Q02297 640 aaPredicted RBP11.6□□□□□ -0.55
SMC5-203ENST00000475540 TXNDC11Q6PKC3 985 aa11.6□□□□□ -0.55
SMC5-203ENST00000475540 IGF2-ASQ6U949 168 aa11.6□□□□□ -0.55
SMC5-203ENST00000475540 LENG1Q96BZ8 264 aaPredicted RBP11.6□□□□□ -0.55
SMC5-203ENST00000475540 BHLHE41Q9C0J9 482 aaPredicted RBP11.6□□□□□ -0.55
SMC5-203ENST00000475540 GZF1Q9H116 711 aaPredicted RBP11.6□□□□□ -0.55
SMC5-203ENST00000475540 NPHS2Q9NP85 383 aa11.6□□□□□ -0.55
SMC5-203ENST00000475540 MSTNO14793 375 aa11.59□□□□□ -0.55
SMC5-203ENST00000475540 GADD45BO75293 160 aaPredicted RBP11.59□□□□□ -0.55
SMC5-203ENST00000475540 ITGB2P05107 769 aa11.59□□□□□ -0.55
SMC5-203ENST00000475540 SELPP16109 830 aa11.59□□□□□ -0.55
SMC5-203ENST00000475540 SHISA2Q6UWI4 295 aa11.59□□□□□ -0.55
SMC5-203ENST00000475540 EHD4Q9H223 541 aa11.59□□□□□ -0.55
SMC5-203ENST00000475540 USP21Q9UK80 565 aa11.59□□□□□ -0.55
SMC5-203ENST00000475540 H3BRJ5 948 aa11.58□□□□□ -0.56
SMC5-203ENST00000475540 DLL1O00548 723 aa11.58□□□□□ -0.56
SMC5-203ENST00000475540 FSCN2O14926 492 aa11.58□□□□□ -0.56
SMC5-203ENST00000475540 MAPK8P45983 427 aa11.58□□□□□ -0.56
SMC5-203ENST00000475540 NLRP2Q9NX02 1062 aa11.58□□□□□ -0.56
SMC5-203ENST00000475540 SOX13Q9UN79 622 aa11.58□□□□□ -0.56
SMC5-203ENST00000475540 PNMA6FA0A0J9YX94 578 aa11.57□□□□□ -0.56
SMC5-203ENST00000475540 CCNJLQ8IV13 435 aa11.57□□□□□ -0.56
SMC5-203ENST00000475540 KLHL23Q8NBE8 558 aa11.57□□□□□ -0.56
SMC5-203ENST00000475540 GATA4P43694 442 aa11.56□□□□□ -0.56
SMC5-203ENST00000475540 ARL4DP49703 201 aa11.56□□□□□ -0.56
SMC5-203ENST00000475540 PIP4K2BP78356 416 aa11.56□□□□□ -0.56
SMC5-203ENST00000475540 ENOX2Q16206 610 aaKnown RBP11.56□□□□□ -0.56
SMC5-203ENST00000475540 WNT8BQ93098 351 aa11.56□□□□□ -0.56
SMC5-203ENST00000475540 TCF12Q99081 682 aa11.56□□□□□ -0.56
SMC5-203ENST00000475540 SPOCK3Q9BQ16 436 aa11.56□□□□□ -0.56
SMC5-203ENST00000475540 SEC31BQ9NQW1 1179 aa11.56□□□□□ -0.56
SMC5-203ENST00000475540 A0A096LPE4 126 aa11.55□□□□□ -0.56
SMC5-203ENST00000475540 A0A1W2PPZ6 126 aa11.55□□□□□ -0.56
SMC5-203ENST00000475540 GALNT11Q8NCW6 608 aa11.55□□□□□ -0.56
SMC5-203ENST00000475540 EPS8L3Q8TE67 593 aaKnown RBP11.55□□□□□ -0.56
SMC5-203ENST00000475540 PPP4R2Q9NY27 417 aa11.55□□□□□ -0.56
SMC5-203ENST00000475540 ZBTB7CA1YPR0 619 aa11.54□□□□□ -0.56
SMC5-203ENST00000475540 METTL12A8MUP2 240 aa11.54□□□□□ -0.56
SMC5-203ENST00000475540 CD68P34810 354 aaPredicted RBP11.54□□□□□ -0.56
SMC5-203ENST00000475540 FMR1Q06787 632 aaKnown RBP eCLIP11.54□□□□□ -0.56
SMC5-203ENST00000475540 IKBKEQ14164 716 aa11.54□□□□□ -0.56
SMC5-203ENST00000475540 SLC7A3Q8WY07 619 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms