RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 HMX2A2RU54 273 aa7.91□□□□□ -1.14
CCDC88A-212ENST00000474059 DHX15O43143 795 aaKnown RBP7.91□□□□□ -1.14
CCDC88A-212ENST00000474059 GP2P55259 537 aaKnown RBP7.91□□□□□ -1.14
CCDC88A-212ENST00000474059 TMEM132AQ24JP5 1023 aa7.91□□□□□ -1.14
CCDC88A-212ENST00000474059 DCAF11Q8TEB1 546 aa7.91□□□□□ -1.14
CCDC88A-212ENST00000474059 PIK3R5Q8WYR1 880 aa7.91□□□□□ -1.14
CCDC88A-212ENST00000474059 KLHDC7BQ96G42 594 aa7.91□□□□□ -1.14
CCDC88A-212ENST00000474059 MYRFLQ96LU7 910 aa7.91□□□□□ -1.14
CCDC88A-212ENST00000474059 NFKBIEO00221 500 aa7.9□□□□□ -1.14
CCDC88A-212ENST00000474059 GSC2O15499 205 aa7.9□□□□□ -1.14
CCDC88A-212ENST00000474059 COBLO75128 1261 aa7.9□□□□□ -1.14
CCDC88A-212ENST00000474059 UVSSAQ2YD98 709 aa7.9□□□□□ -1.14
CCDC88A-212ENST00000474059 TMEM164Q5U3C3 297 aa7.9□□□□□ -1.14
CCDC88A-212ENST00000474059 RNF43Q68DV7 783 aa7.9□□□□□ -1.14
CCDC88A-212ENST00000474059 UTP4Q969X6 686 aaKnown RBP7.9□□□□□ -1.14
CCDC88A-212ENST00000474059 ADAM19Q9H013 955 aa7.9□□□□□ -1.14
CCDC88A-212ENST00000474059 TMEM63CQ9P1W3 806 aa7.9□□□□□ -1.14
CCDC88A-212ENST00000474059 CNTN3Q9P232 1028 aa7.9□□□□□ -1.14
CCDC88A-212ENST00000474059 SMNDC1O75940 238 aaKnown RBP eCLIP7.89□□□□□ -1.15
CCDC88A-212ENST00000474059 DTX1Q86Y01 620 aa7.89□□□□□ -1.15
CCDC88A-212ENST00000474059 ZMYND15Q9H091 742 aa7.89□□□□□ -1.15
CCDC88A-212ENST00000474059 ABI2Q9NYB9 513 aaPredicted RBP7.89□□□□□ -1.15
CCDC88A-212ENST00000474059 TAL1P17542 331 aaPredicted RBP7.88□□□□□ -1.15
CCDC88A-212ENST00000474059 PREPP48147 710 aa7.88□□□□□ -1.15
CCDC88A-212ENST00000474059 HGSNATQ68CP4 663 aa7.88□□□□□ -1.15
CCDC88A-212ENST00000474059 FAM20CQ8IXL6 584 aa7.88□□□□□ -1.15
CCDC88A-212ENST00000474059 KLHL23Q8NBE8 558 aa7.88□□□□□ -1.15
CCDC88A-212ENST00000474059 HHIPQ96QV1 700 aa7.88□□□□□ -1.15
CCDC88A-212ENST00000474059 CEP41Q9BYV8 373 aa7.88□□□□□ -1.15
CCDC88A-212ENST00000474059 KANSL3Q9P2N6 904 aa7.88□□□□□ -1.15
CCDC88A-212ENST00000474059 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.87□□□□□ -1.15
CCDC88A-212ENST00000474059 PTCD1O75127 700 aaKnown RBP7.87□□□□□ -1.15
CCDC88A-212ENST00000474059 SCNN1AP37088 669 aa7.87□□□□□ -1.15
CCDC88A-212ENST00000474059 DUOXA2Q1HG44 320 aa7.87□□□□□ -1.15
CCDC88A-212ENST00000474059 TTC39BQ5VTQ0 682 aaPredicted RBP7.87□□□□□ -1.15
CCDC88A-212ENST00000474059 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.87□□□□□ -1.15
CCDC88A-212ENST00000474059 DBNDD2Q9BQY9 259 aa7.87□□□□□ -1.15
CCDC88A-212ENST00000474059 STIM2Q9P246 746 aa7.87□□□□□ -1.15
CCDC88A-212ENST00000474059 SALL4Q9UJQ4 1053 aa7.87□□□□□ -1.15
CCDC88A-212ENST00000474059 IRAK1P51617 712 aa7.86□□□□□ -1.15
CCDC88A-212ENST00000474059 ATCAYQ86WG3 371 aa7.86□□□□□ -1.15
CCDC88A-212ENST00000474059 CLP1Q92989 425 aaKnown RBP7.86□□□□□ -1.15
CCDC88A-212ENST00000474059 SPACA7Q96KW9 195 aa7.86□□□□□ -1.15
CCDC88A-212ENST00000474059 ELP3Q9H9T3 547 aa7.86□□□□□ -1.15
CCDC88A-212ENST00000474059 SEPT3Q9UH03 358 aa7.86□□□□□ -1.15
CCDC88A-212ENST00000474059 PAX4O43316 350 aa7.85□□□□□ -1.15
CCDC88A-212ENST00000474059 ATG7O95352 703 aa7.85□□□□□ -1.15
CCDC88A-212ENST00000474059 SHKBP1Q8TBC3 707 aa7.85□□□□□ -1.15
CCDC88A-212ENST00000474059 NUDT16Q96DE0 195 aaKnown RBP7.85□□□□□ -1.15
CCDC88A-212ENST00000474059 FAM83CQ9BQN1 747 aa7.85□□□□□ -1.15
CCDC88A-212ENST00000474059 CHRDQ9H2X0 955 aa7.85□□□□□ -1.15
CCDC88A-212ENST00000474059 SEC31BQ9NQW1 1179 aa7.85□□□□□ -1.15
CCDC88A-212ENST00000474059 FAM13BQ9NYF5 915 aa7.85□□□□□ -1.15
CCDC88A-212ENST00000474059 H3BRJ5 948 aa7.84□□□□□ -1.15
CCDC88A-212ENST00000474059 TRPA1O75762 1119 aa7.84□□□□□ -1.15
CCDC88A-212ENST00000474059 PTPRAP18433 802 aa7.84□□□□□ -1.15
CCDC88A-212ENST00000474059 HOXA10P31260 410 aaPredicted RBP7.84□□□□□ -1.15
CCDC88A-212ENST00000474059 CLEC10AQ8IUN9 316 aa7.84□□□□□ -1.15
CCDC88A-212ENST00000474059 C1orf127Q8N9H9 656 aa7.84□□□□□ -1.15
CCDC88A-212ENST00000474059 SOX13Q9UN79 622 aa7.84□□□□□ -1.15
CCDC88A-212ENST00000474059 PDE12Q6L8Q7 609 aaKnown RBP7.83□□□□□ -1.16
CCDC88A-212ENST00000474059 NFXL1Q6ZNB6 911 aa7.83□□□□□ -1.16
CCDC88A-212ENST00000474059 NCAPG2Q86XI2 1143 aa7.83□□□□□ -1.16
CCDC88A-212ENST00000474059 DZANK1Q9NVP4 752 aa7.83□□□□□ -1.16
CCDC88A-212ENST00000474059 FNDC3AQ9Y2H6 1198 aaKnown RBP7.83□□□□□ -1.16
CCDC88A-212ENST00000474059 A6NHS1 94 aa7.82□□□□□ -1.16
CCDC88A-212ENST00000474059 BMP3P12645 472 aa7.82□□□□□ -1.16
CCDC88A-212ENST00000474059 NLRP12P59046 1061 aa7.82□□□□□ -1.16
CCDC88A-212ENST00000474059 PIP4K2BP78356 416 aa7.82□□□□□ -1.16
CCDC88A-212ENST00000474059 INTS5Q6P9B9 1019 aaKnown RBP7.82□□□□□ -1.16
CCDC88A-212ENST00000474059 BEND4Q6ZU67 534 aa7.82□□□□□ -1.16
CCDC88A-212ENST00000474059 SHISA5Q8N114 240 aa7.82□□□□□ -1.16
CCDC88A-212ENST00000474059 GGNBP2Q9H3C7 697 aa7.82□□□□□ -1.16
CCDC88A-212ENST00000474059 ADGRE2Q9UHX3 823 aa7.82□□□□□ -1.16
CCDC88A-212ENST00000474059 ANKRD34AQ69YU3 496 aa7.81□□□□□ -1.16
CCDC88A-212ENST00000474059 ABTB2Q8N961 1025 aa7.81□□□□□ -1.16
CCDC88A-212ENST00000474059 WNT8BQ93098 351 aa7.81□□□□□ -1.16
CCDC88A-212ENST00000474059 OSGEPQ9NPF4 335 aa7.81□□□□□ -1.16
CCDC88A-212ENST00000474059 DLGAP3O95886 979 aa7.8□□□□□ -1.16
CCDC88A-212ENST00000474059 XKR5Q6UX68 686 aa7.8□□□□□ -1.16
CCDC88A-212ENST00000474059 KRTAP4-7Q9BYR0 210 aa7.8□□□□□ -1.16
CCDC88A-212ENST00000474059 FAM117BQ6P1L5 589 aa7.79□□□□□ -1.16
CCDC88A-212ENST00000474059 VN1R5Q7Z5H4 357 aa7.79□□□□□ -1.16
CCDC88A-212ENST00000474059 RNF208Q9H0X6 261 aa7.79□□□□□ -1.16
CCDC88A-212ENST00000474059 MEGF11A6BM72 1044 aa7.78□□□□□ -1.16
CCDC88A-212ENST00000474059 PDE2AO00408 941 aaPredicted RBP7.78□□□□□ -1.16
CCDC88A-212ENST00000474059 GRIK1P39086 918 aa7.78□□□□□ -1.16
CCDC88A-212ENST00000474059 TXKP42681 527 aa7.78□□□□□ -1.16
CCDC88A-212ENST00000474059 MSMPQ1L6U9 139 aa7.78□□□□□ -1.16
CCDC88A-212ENST00000474059 SGO2Q562F6 1265 aa7.78□□□□□ -1.16
CCDC88A-212ENST00000474059 ZNF438Q7Z4V0 828 aa7.78□□□□□ -1.16
CCDC88A-212ENST00000474059 EDEM1Q92611 657 aa7.78□□□□□ -1.16
CCDC88A-212ENST00000474059 RUSC1Q9BVN2 902 aa7.78□□□□□ -1.16
CCDC88A-212ENST00000474059 HIF3AQ9Y2N7 669 aa7.78□□□□□ -1.16
CCDC88A-212ENST00000474059 ARID1BQ8NFD5 2236 aaPredicted RBP7.77□□□□□ -1.17
CCDC88A-212ENST00000474059 WDR64B1ANS9 1081 aa7.77□□□□□ -1.17
CCDC88A-212ENST00000474059 SOX1O00570 391 aaPredicted RBP7.77□□□□□ -1.17
CCDC88A-212ENST00000474059 TIAF1O95411 115 aa7.77□□□□□ -1.17
CCDC88A-212ENST00000474059 PDGFAP04085 211 aa7.77□□□□□ -1.17
CCDC88A-212ENST00000474059 F13BP05160 661 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms