RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 KDM4FA0A1W2PPD8 638 aa22.56■■□□□ 1.2
VIM-203ENST00000469543 NR1I2O75469 434 aa22.56■■□□□ 1.2
VIM-203ENST00000469543 STARD3NLO95772 234 aa22.56■■□□□ 1.2
VIM-203ENST00000469543 NSUN7Q8NE18 718 aaKnown RBP22.56■■□□□ 1.2
VIM-203ENST00000469543 TTLL11Q8NHH1 800 aa22.56■■□□□ 1.2
VIM-203ENST00000469543 NKX2-3Q8TAU0 364 aa22.56■■□□□ 1.2
VIM-203ENST00000469543 TTC12Q9H892 705 aaPredicted RBP22.56■■□□□ 1.2
VIM-203ENST00000469543 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.56■■□□□ 1.27e-10■■□□□ 11.4
VIM-203ENST00000469543 PLEKHG2Q9H7P9 1386 aa22.56■■□□□ 1.2
VIM-203ENST00000469543 PCCAP05165 728 aaPredicted RBP22.55■■□□□ 1.2
VIM-203ENST00000469543 CSPP1Q1MSJ5 1256 aa22.55■■□□□ 1.2
VIM-203ENST00000469543 NLRP10Q86W26 655 aa22.55■■□□□ 1.2
VIM-203ENST00000469543 C17orf53Q8N3J3 647 aaPredicted RBP22.55■■□□□ 1.2
VIM-203ENST00000469543 GOLGA6L4A6NEF3 574 aa22.55■■□□□ 1.2
VIM-203ENST00000469543 FGAP02671 866 aa22.55■■□□□ 1.2
VIM-203ENST00000469543 CSF1RP07333 972 aa22.54■■□□□ 1.2
VIM-203ENST00000469543 GIGYF2Q6Y7W6 1299 aaKnown RBP22.54■■□□□ 1.2
VIM-203ENST00000469543 CCDC39Q9UFE4 941 aa22.54■■□□□ 1.2
VIM-203ENST00000469543 RESTQ13127 1097 aa22.54■■□□□ 1.2
VIM-203ENST00000469543 METTL24Q5JXM2 366 aa22.54■■□□□ 1.2
VIM-203ENST00000469543 GJB4Q9NTQ9 266 aa22.54■■□□□ 1.2
VIM-203ENST00000469543 MAP3K15Q6ZN16 1313 aa22.54■■□□□ 1.2
VIM-203ENST00000469543 PTPDC1A2A3K4 754 aa22.54■■□□□ 1.2
VIM-203ENST00000469543 PFKFB2O60825 505 aa22.54■■□□□ 1.2
VIM-203ENST00000469543 MCAMP43121 646 aa22.54■■□□□ 1.2
VIM-203ENST00000469543 OTUD7BQ6GQQ9 843 aa22.54■■□□□ 1.2
VIM-203ENST00000469543 RFX7Q2KHR2 1363 aa22.53■■□□□ 1.2
VIM-203ENST00000469543 OFD1O75665 1012 aa22.53■■□□□ 1.2
VIM-203ENST00000469543 LETM1O95202 739 aaPredicted RBP22.53■■□□□ 1.2
VIM-203ENST00000469543 CYP19A1P11511 503 aaPredicted RBP22.53■■□□□ 1.2
VIM-203ENST00000469543 PDIA3P30101 505 aaKnown RBP22.53■■□□□ 1.2
VIM-203ENST00000469543 TRMT112Q9UI30 125 aaKnown RBP22.53■■□□□ 1.2
VIM-203ENST00000469543 R3HCC1Q9Y3T6 440 aaKnown RBP22.53■■□□□ 1.2
VIM-203ENST00000469543 RIPOR2Q9Y4F9 1068 aa22.53■■□□□ 1.2
VIM-203ENST00000469543 STRCQ7RTU9 1775 aa22.53■■□□□ 1.2
VIM-203ENST00000469543 KDM4AO75164 1064 aa22.52■■□□□ 1.2
VIM-203ENST00000469543 TRIM28Q13263 835 aaKnown RBP22.52■■□□□ 1.2
VIM-203ENST00000469543 SCAND2PQ9GZW5 306 aaPredicted RBP22.52■■□□□ 1.2
VIM-203ENST00000469543 CNNM1Q9NRU3 951 aa22.52■■□□□ 1.2
VIM-203ENST00000469543 LUZP1Q86V48 1076 aa22.52■■□□□ 1.2
VIM-203ENST00000469543 SMARCC2Q8TAQ2 1214 aa22.52■■□□□ 1.2
VIM-203ENST00000469543 NUP62CLQ9H1M0 184 aa22.52■■□□□ 1.2
VIM-203ENST00000469543 IRS4O14654 1257 aaPredicted RBP22.51■■□□□ 1.19
VIM-203ENST00000469543 ZNF500O60304 480 aaPredicted RBP22.51■■□□□ 1.19
VIM-203ENST00000469543 ATP2B3Q16720 1220 aa22.51■■□□□ 1.19
VIM-203ENST00000469543 BICD2Q8TD16 824 aa22.51■■□□□ 1.19
VIM-203ENST00000469543 DNAJC5Q9H3Z4 198 aa22.51■■□□□ 1.19
VIM-203ENST00000469543 LAMA4Q16363 1823 aa22.51■■□□□ 1.19
VIM-203ENST00000469543 A0A087WWV3 80 aa22.51■■□□□ 1.19
VIM-203ENST00000469543 ADD1P35611 737 aaKnown RBP22.5■■□□□ 1.19
VIM-203ENST00000469543 SPC24Q8NBT2 197 aa22.5■■□□□ 1.19
VIM-203ENST00000469543 TNMDQ9H2S6 317 aa22.5■■□□□ 1.19
VIM-203ENST00000469543 AKAP2Q9Y2D5 859 aa22.5■■□□□ 1.19
VIM-203ENST00000469543 ELP1O95163 1332 aa22.5■■□□□ 1.19
VIM-203ENST00000469543 HMGB1P09429 215 aaKnown RBP22.5■■□□□ 1.19
VIM-203ENST00000469543 INCENPQ9NQS7 918 aa22.49■■□□□ 1.19
VIM-203ENST00000469543 MRVI1Q9Y6F6 885 aa22.49■■□□□ 1.19
VIM-203ENST00000469543 PAPPAQ13219 1627 aa22.49■■□□□ 1.19
VIM-203ENST00000469543 FDPSP14324 419 aaKnown RBP22.49■■□□□ 1.19
VIM-203ENST00000469543 MAP3K11Q16584 847 aa22.49■■□□□ 1.19
VIM-203ENST00000469543 UBN2Q6ZU65 1347 aa22.48■■□□□ 1.19
VIM-203ENST00000469543 GPAA1O43292 621 aa22.48■■□□□ 1.19
VIM-203ENST00000469543 CCDC192P0DO97 292 aa22.48■■□□□ 1.19
VIM-203ENST00000469543 UVSSAQ2YD98 709 aa22.48■■□□□ 1.19
VIM-203ENST00000469543 VSIG10Q8N0Z9 540 aa22.48■■□□□ 1.19
VIM-203ENST00000469543 ERCC4Q92889 916 aaPredicted RBP22.48■■□□□ 1.19
VIM-203ENST00000469543 ACSBG1Q96GR2 724 aa22.48■■□□□ 1.19
VIM-203ENST00000469543 TEX13AQ9BXU3 409 aaPredicted RBP22.48■■□□□ 1.19
VIM-203ENST00000469543 AGXT2Q9BYV1 514 aa22.48■■□□□ 1.19
VIM-203ENST00000469543 IDH1O75874 414 aaKnown RBP22.48■■□□□ 1.19
VIM-203ENST00000469543 CTSWP56202 376 aa22.48■■□□□ 1.19
VIM-203ENST00000469543 TYRO3Q06418 890 aa22.48■■□□□ 1.19
VIM-203ENST00000469543 SLC9C2Q5TAH2 1124 aa22.48■■□□□ 1.19
VIM-203ENST00000469543 PHKA1P46020 1223 aa22.47■■□□□ 1.19
VIM-203ENST00000469543 USP28Q96RU2 1077 aa22.47■■□□□ 1.19
VIM-203ENST00000469543 EXOC5O00471 708 aa22.47■■□□□ 1.19
VIM-203ENST00000469543 ILDR1Q86SU0 546 aaPredicted RBP22.47■■□□□ 1.19
VIM-203ENST00000469543 PLA2G12BQ9BX93 195 aa22.47■■□□□ 1.19
VIM-203ENST00000469543 PIH1D3Q9NQM4 214 aaKnown RBP22.47■■□□□ 1.19
VIM-203ENST00000469543 ANO6Q4KMQ2 910 aa22.46■■□□□ 1.19
VIM-203ENST00000469543 DZIP3Q86Y13 1208 aaKnown RBP22.46■■□□□ 1.19
VIM-203ENST00000469543 RIC1Q4ADV7 1423 aa22.46■■□□□ 1.19
VIM-203ENST00000469543 RXRAP19793 462 aa22.46■■□□□ 1.19
VIM-203ENST00000469543 ABCA3Q99758 1704 aa22.46■■□□□ 1.19
VIM-203ENST00000469543 ANKRD18BA2A2Z9 1011 aa22.45■■□□□ 1.19
VIM-203ENST00000469543 ADAMTS2O95450 1211 aa22.45■■□□□ 1.19
VIM-203ENST00000469543 ANTXR2P58335 489 aa22.45■■□□□ 1.19
VIM-203ENST00000469543 IMMTQ16891 758 aaKnown RBP22.45■■□□□ 1.18
VIM-203ENST00000469543 PRC1O43663 620 aa22.44■■□□□ 1.18
VIM-203ENST00000469543 APPP05067 770 aa22.44■■□□□ 1.18
VIM-203ENST00000469543 VGLL2Q8N8G2 317 aa22.44■■□□□ 1.18
VIM-203ENST00000469543 APPBP2Q92624 585 aa22.44■■□□□ 1.18
VIM-203ENST00000469543 NBPF3Q9H094 633 aa22.44■■□□□ 1.18
VIM-203ENST00000469543 BCL9O00512 1426 aa22.44■■□□□ 1.18
VIM-203ENST00000469543 POLR3DP05423 398 aaPredicted RBP22.44■■□□□ 1.18
VIM-203ENST00000469543 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.44■■□□□ 1.18
VIM-203ENST00000469543 SEC31BQ9NQW1 1179 aa22.44■■□□□ 1.18
VIM-203ENST00000469543 CCDC102BQ68D86 513 aa22.44■■□□□ 1.18
VIM-203ENST00000469543 GOLPH3LQ9H4A5 285 aa22.44■■□□□ 1.18
VIM-203ENST00000469543 SENP2Q9HC62 589 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms