RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 SNAP23O00161 211 aa18.07■□□□□ 0.48
LMNB1-203ENST00000460265 ZAP70P43403 619 aa18.07■□□□□ 0.48
LMNB1-203ENST00000460265 DZIP3Q86Y13 1208 aaKnown RBP18.07■□□□□ 0.48
LMNB1-203ENST00000460265 CCDC82Q8N4S0 544 aa18.07■□□□□ 0.48
LMNB1-203ENST00000460265 TTC12Q9H892 705 aaPredicted RBP18.07■□□□□ 0.48
LMNB1-203ENST00000460265 IMMTQ16891 758 aaKnown RBP18.07■□□□□ 0.48
LMNB1-203ENST00000460265 MST1RQ04912 1400 aa18.07■□□□□ 0.48
LMNB1-203ENST00000460265 RNF113AO15541 343 aaKnown RBP18.07■□□□□ 0.48
LMNB1-203ENST00000460265 ME1P48163 572 aa18.07■□□□□ 0.48
LMNB1-203ENST00000460265 SLC9C2Q5TAH2 1124 aa18.07■□□□□ 0.48
LMNB1-203ENST00000460265 NUP62CLQ9H1M0 184 aa18.07■□□□□ 0.48
LMNB1-203ENST00000460265 FOXO4P98177 505 aa18.06■□□□□ 0.48
LMNB1-203ENST00000460265 CHMP4CQ96CF2 233 aa18.06■□□□□ 0.48
LMNB1-203ENST00000460265 ABCF2Q9UG63 623 aa18.06■□□□□ 0.48
LMNB1-203ENST00000460265 ZBTB1Q9Y2K1 713 aa18.06■□□□□ 0.48
LMNB1-203ENST00000460265 RFX5P48382 616 aaPredicted RBP18.06■□□□□ 0.48
LMNB1-203ENST00000460265 POLR3DP05423 398 aaPredicted RBP18.06■□□□□ 0.48
LMNB1-203ENST00000460265 RXRAP19793 462 aa18.06■□□□□ 0.48
LMNB1-203ENST00000460265 TEX13AQ9BXU3 409 aaPredicted RBP18.06■□□□□ 0.48
LMNB1-203ENST00000460265 DACT1Q9NYF0 836 aa18.06■□□□□ 0.48
LMNB1-203ENST00000460265 EPB41L2O43491 1005 aaKnown RBP18.05■□□□□ 0.48
LMNB1-203ENST00000460265 ATP6V1AP38606 617 aa18.05■□□□□ 0.48
LMNB1-203ENST00000460265 KCNQ4P56696 695 aa18.05■□□□□ 0.48
LMNB1-203ENST00000460265 OTUD7BQ6GQQ9 843 aa18.05■□□□□ 0.48
LMNB1-203ENST00000460265 VPS37DQ86XT2 251 aa18.05■□□□□ 0.48
LMNB1-203ENST00000460265 PIBF1Q8WXW3 757 aa18.05■□□□□ 0.48
LMNB1-203ENST00000460265 GREM2Q9H772 168 aa18.05■□□□□ 0.48
LMNB1-203ENST00000460265 A0A0G2JLW4 131 aa18.05■□□□□ 0.48
LMNB1-203ENST00000460265 ZNF213O14771 459 aa18.05■□□□□ 0.48
LMNB1-203ENST00000460265 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.05■□□□□ 0.488e-7■■■□□ 17.2
LMNB1-203ENST00000460265 DHX32Q7L7V1 743 aaKnown RBP18.04■□□□□ 0.48
LMNB1-203ENST00000460265 CCDC192P0DO97 292 aa18.04■□□□□ 0.48
LMNB1-203ENST00000460265 ATP2B1P20020 1258 aa18.04■□□□□ 0.48
LMNB1-203ENST00000460265 GPHNQ9NQX3 736 aaPredicted RBP18.04■□□□□ 0.48
LMNB1-203ENST00000460265 UTYO14607 1347 aa18.03■□□□□ 0.48
LMNB1-203ENST00000460265 USP42Q9H9J4 1324 aaKnown RBP18.03■□□□□ 0.48
LMNB1-203ENST00000460265 HSPD1P10809 573 aaKnown RBP18.03■□□□□ 0.48
LMNB1-203ENST00000460265 ATG9AQ7Z3C6 839 aa18.03■□□□□ 0.48
LMNB1-203ENST00000460265 SDF4Q9BRK5 362 aa18.03■□□□□ 0.48
LMNB1-203ENST00000460265 CHD2O14647 1828 aaKnown RBP18.03■□□□□ 0.48
LMNB1-203ENST00000460265 ADCY5O95622 1261 aa18.03■□□□□ 0.48
LMNB1-203ENST00000460265 AIDAQ96BJ3 306 aa18.03■□□□□ 0.48
LMNB1-203ENST00000460265 CTNNA3Q9UI47 895 aa18.03■□□□□ 0.48
LMNB1-203ENST00000460265 MAP3K11Q16584 847 aa18.03■□□□□ 0.48
LMNB1-203ENST00000460265 TTC6Q86TZ1 520 aa18.03■□□□□ 0.48
LMNB1-203ENST00000460265 SCAND2PQ9GZW5 306 aaPredicted RBP18.03■□□□□ 0.48
LMNB1-203ENST00000460265 CCDC73Q6ZRK6 1079 aa18.02■□□□□ 0.48
LMNB1-203ENST00000460265 CCDC66A2RUB6 948 aa18.02■□□□□ 0.48
LMNB1-203ENST00000460265 GOLGA8BA8MQT2 603 aa18.02■□□□□ 0.48
LMNB1-203ENST00000460265 BECN2A8MW95 431 aa18.02■□□□□ 0.48
LMNB1-203ENST00000460265 TOB2Q14106 344 aaPredicted RBP18.02■□□□□ 0.48
LMNB1-203ENST00000460265 DDB1Q16531 1140 aa18.02■□□□□ 0.48
LMNB1-203ENST00000460265 RABL6Q3YEC7 729 aaPredicted RBP18.02■□□□□ 0.48
LMNB1-203ENST00000460265 GTF2F1P35269 517 aaKnown RBP eCLIP18.02■□□□□ 0.472e-34■■■■■ 36.5
LMNB1-203ENST00000460265 ATG3Q9NT62 314 aa18.02■□□□□ 0.47
LMNB1-203ENST00000460265 KLF18A0A0U1RQI7 1052 aa18.01■□□□□ 0.47
LMNB1-203ENST00000460265 SYNE3Q6ZMZ3 975 aa18.01■□□□□ 0.47
LMNB1-203ENST00000460265 OSBP2Q969R2 916 aa18.01■□□□□ 0.47
LMNB1-203ENST00000460265 TRIM5Q9C035 493 aa18.01■□□□□ 0.47
LMNB1-203ENST00000460265 LRP2BPQ9P2M1 347 aa18.01■□□□□ 0.47
LMNB1-203ENST00000460265 PTPDC1A2A3K4 754 aa18.01■□□□□ 0.47
LMNB1-203ENST00000460265 E7EWF7 191 aa18.01■□□□□ 0.47
LMNB1-203ENST00000460265 HMGB1P09429 215 aaKnown RBP18.01■□□□□ 0.47
LMNB1-203ENST00000460265 LIG1P18858 919 aa18.01■□□□□ 0.47
LMNB1-203ENST00000460265 GOLGA6L19H0YKK7 550 aa18■□□□□ 0.47
LMNB1-203ENST00000460265 IRX5P78411 483 aaPredicted RBP18■□□□□ 0.47
LMNB1-203ENST00000460265 SCARF1Q14162 830 aa18■□□□□ 0.47
LMNB1-203ENST00000460265 CCDC24Q8N4L8 307 aa18■□□□□ 0.47
LMNB1-203ENST00000460265 RIOK3O14730 519 aaKnown RBP18■□□□□ 0.47
LMNB1-203ENST00000460265 MICU3Q86XE3 530 aa18■□□□□ 0.47
LMNB1-203ENST00000460265 STK38Q15208 465 aa17.99■□□□□ 0.47
LMNB1-203ENST00000460265 ZBTB38Q8NAP3 1195 aaPredicted RBP17.99■□□□□ 0.47
LMNB1-203ENST00000460265 FEZ1Q99689 392 aa17.99■□□□□ 0.47
LMNB1-203ENST00000460265 FTOQ9C0B1 505 aaKnown RBP eCLIP17.99■□□□□ 0.47
LMNB1-203ENST00000460265 HELLSQ9NRZ9 838 aa17.99■□□□□ 0.47
LMNB1-203ENST00000460265 OGFRQ9NZT2 677 aa17.99■□□□□ 0.47
LMNB1-203ENST00000460265 CFAP45Q9UL16 551 aa17.99■□□□□ 0.47
LMNB1-203ENST00000460265 NIP7Q9Y221 180 aaKnown RBP eCLIP17.99■□□□□ 0.47
LMNB1-203ENST00000460265 RPAP1Q9BWH6 1393 aaPredicted RBP17.99■□□□□ 0.47
LMNB1-203ENST00000460265 CACNA1FO60840 1977 aa17.99■□□□□ 0.47
LMNB1-203ENST00000460265 M0R2C6 588 aa17.99■□□□□ 0.47
LMNB1-203ENST00000460265 SCRN1Q12765 414 aa17.99■□□□□ 0.47
LMNB1-203ENST00000460265 GPAA1O43292 621 aa17.99■□□□□ 0.47
LMNB1-203ENST00000460265 PRC1O43663 620 aa17.99■□□□□ 0.47
LMNB1-203ENST00000460265 ERCC4Q92889 916 aaPredicted RBP17.99■□□□□ 0.47
LMNB1-203ENST00000460265 MAST3O60307 1309 aa17.98■□□□□ 0.47
LMNB1-203ENST00000460265 CPLX2Q6PUV4 134 aaKnown RBP17.98■□□□□ 0.47
LMNB1-203ENST00000460265 GIGYF2Q6Y7W6 1299 aaKnown RBP17.98■□□□□ 0.47
LMNB1-203ENST00000460265 GTF3C6Q969F1 213 aa17.98■□□□□ 0.47
LMNB1-203ENST00000460265 ERICH4A6NGS2 130 aa17.98■□□□□ 0.47
LMNB1-203ENST00000460265 KINO60870 393 aaKnown RBP17.98■□□□□ 0.47
LMNB1-203ENST00000460265 FGAP02671 866 aa17.98■□□□□ 0.47
LMNB1-203ENST00000460265 ORC3Q9UBD5 711 aaPredicted RBP17.98■□□□□ 0.47
LMNB1-203ENST00000460265 MINDY4BA8MYZ0 360 aa17.97■□□□□ 0.47
LMNB1-203ENST00000460265 TDO2P48775 406 aa17.97■□□□□ 0.47
LMNB1-203ENST00000460265 STOX1Q6ZVD7 989 aa17.97■□□□□ 0.47
LMNB1-203ENST00000460265 C8orf76Q96K31 380 aa17.97■□□□□ 0.47
LMNB1-203ENST00000460265 PUS7LQ9H0K6 701 aaKnown RBP17.97■□□□□ 0.47
LMNB1-203ENST00000460265 IGHMBP2P38935 993 aaKnown RBP17.97■□□□□ 0.47
LMNB1-203ENST00000460265 MIGA1Q8NAN2 632 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms