RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 H7C1D1 291 aa21.76■■□□□ 1.07
USP39-208ENST00000455732 UBTFL1P0CB47 393 aaPredicted RBP21.76■■□□□ 1.07
USP39-208ENST00000455732 TXNRD3Q86VQ6 643 aa21.76■■□□□ 1.07
USP39-208ENST00000455732 FRAT1Q92837 279 aaPredicted RBP21.76■■□□□ 1.07
USP39-208ENST00000455732 HDAC5Q9UQL6 1122 aa21.76■■□□□ 1.07
USP39-208ENST00000455732 HSPA1AP0DMV8 641 aaKnown RBP21.75■■□□□ 1.07
USP39-208ENST00000455732 HSPA1BP0DMV9 641 aaKnown RBP21.75■■□□□ 1.07
USP39-208ENST00000455732 ZKSCAN2Q63HK3 967 aa21.75■■□□□ 1.07
USP39-208ENST00000455732 LDHAL6AQ6ZMR3 332 aa21.75■■□□□ 1.07
USP39-208ENST00000455732 ZC3H15Q8WU90 426 aaKnown RBP21.75■■□□□ 1.07
USP39-208ENST00000455732 ZNF594Q96JF6 807 aaPredicted RBP21.75■■□□□ 1.07
USP39-208ENST00000455732 KLRK1P26718 216 aa21.74■■□□□ 1.07
USP39-208ENST00000455732 FMR1Q06787 632 aaKnown RBP eCLIP21.74■■□□□ 1.073e-6■■■□□ 16.1
USP39-208ENST00000455732 COL13A1Q5TAT6 717 aaPredicted RBP21.74■■□□□ 1.07
USP39-208ENST00000455732 SAMD7Q7Z3H4 446 aa21.74■■□□□ 1.07
USP39-208ENST00000455732 EGFRP00533 1210 aa21.73■■□□□ 1.07
USP39-208ENST00000455732 RSBN1LQ6PCB5 846 aaPredicted RBP21.73■■□□□ 1.07
USP39-208ENST00000455732 AGBL3Q8NEM8 1001 aa21.73■■□□□ 1.07
USP39-208ENST00000455732 GMLQ99445 158 aa21.73■■□□□ 1.07
USP39-208ENST00000455732 MEIS3Q99687 375 aa21.73■■□□□ 1.07
USP39-208ENST00000455732 COA1Q9GZY4 146 aa21.73■■□□□ 1.07
USP39-208ENST00000455732 CNNM1Q9NRU3 951 aa21.73■■□□□ 1.07
USP39-208ENST00000455732 TNNQ9UQP3 1299 aa21.73■■□□□ 1.07
USP39-208ENST00000455732 IRS2Q9Y4H2 1338 aa21.73■■□□□ 1.07
USP39-208ENST00000455732 USP17L3A6NCW0 530 aa21.72■■□□□ 1.07
USP39-208ENST00000455732 USP17L4A6NCW7 530 aa21.72■■□□□ 1.07
USP39-208ENST00000455732 SNAP23O00161 211 aa21.72■■□□□ 1.07
USP39-208ENST00000455732 TRAF5O00463 557 aa21.72■■□□□ 1.07
USP39-208ENST00000455732 TAF5LO75529 589 aa21.72■■□□□ 1.07
USP39-208ENST00000455732 GNAI3P08754 354 aa21.72■■□□□ 1.07
USP39-208ENST00000455732 C15orf52Q6ZUT6 534 aaKnown RBP21.72■■□□□ 1.07
USP39-208ENST00000455732 USP17L1Q7RTZ2 530 aa21.72■■□□□ 1.07
USP39-208ENST00000455732 HELBQ8NG08 1087 aaPredicted RBP21.72■■□□□ 1.07
USP39-208ENST00000455732 MKRN1Q9UHC7 482 aaKnown RBP21.72■■□□□ 1.07
USP39-208ENST00000455732 CNTNAP1P78357 1384 aa21.72■■□□□ 1.07
USP39-208ENST00000455732 KCNJ4P48050 445 aa21.71■■□□□ 1.07
USP39-208ENST00000455732 TBC1D10BQ4KMP7 808 aaPredicted RBP21.71■■□□□ 1.07
USP39-208ENST00000455732 RIPOR2Q9Y4F9 1068 aa21.71■■□□□ 1.07
USP39-208ENST00000455732 RFX5P48382 616 aaPredicted RBP21.7■■□□□ 1.06
USP39-208ENST00000455732 ZNF280AP59817 542 aaPredicted RBP21.7■■□□□ 1.06
USP39-208ENST00000455732 TNS4Q8IZW8 715 aa21.7■■□□□ 1.06
USP39-208ENST00000455732 CLUAP1Q96AJ1 413 aa21.7■■□□□ 1.06
USP39-208ENST00000455732 GLIS2Q9BZE0 524 aaPredicted RBP21.7■■□□□ 1.06
USP39-208ENST00000455732 MROH5Q6ZUA9 1318 aa21.7■■□□□ 1.06
USP39-208ENST00000455732 DACT2Q5SW24 774 aa21.69■■□□□ 1.06
USP39-208ENST00000455732 CST9Q5W186 159 aa21.69■■□□□ 1.06
USP39-208ENST00000455732 PUS3Q9BZE2 481 aaKnown RBP21.69■■□□□ 1.06
USP39-208ENST00000455732 LRRFIP2Q9Y608 721 aaKnown RBP21.69■■□□□ 1.06
USP39-208ENST00000455732 KIF4BQ2VIQ3 1234 aa21.68■■□□□ 1.06
USP39-208ENST00000455732 STRIP1Q5VSL9 837 aa21.68■■□□□ 1.06
USP39-208ENST00000455732 TMEM57Q8N5G2 664 aa21.68■■□□□ 1.06
USP39-208ENST00000455732 RASSF10A6NK89 507 aa21.67■■□□□ 1.06
USP39-208ENST00000455732 UBE4AQ14139 1066 aa21.67■■□□□ 1.06
USP39-208ENST00000455732 RBM26Q5T8P6 1007 aaKnown RBP21.67■■□□□ 1.06
USP39-208ENST00000455732 CDC37L1Q7L3B6 337 aa21.67■■□□□ 1.06
USP39-208ENST00000455732 FTSJ3Q8IY81 847 aaKnown RBP21.67■■□□□ 1.06
USP39-208ENST00000455732 DZIP1LQ8IYY4 767 aaKnown RBP21.67■■□□□ 1.06
USP39-208ENST00000455732 CD209Q9NNX6 404 aa21.67■■□□□ 1.06
USP39-208ENST00000455732 USP17L8P0C7I0 530 aa21.66■■□□□ 1.06
USP39-208ENST00000455732 PTPN12Q05209 780 aaKnown RBP21.66■■□□□ 1.06
USP39-208ENST00000455732 MTX1Q13505 466 aa21.66■■□□□ 1.06
USP39-208ENST00000455732 LRRC24Q50LG9 513 aa21.66■■□□□ 1.06
USP39-208ENST00000455732 MXD3Q9BW11 206 aa21.66■■□□□ 1.06
USP39-208ENST00000455732 FBXO3Q9UK99 471 aa21.66■■□□□ 1.06
USP39-208ENST00000455732 MYO3BQ8WXR4 1341 aa21.65■■□□□ 1.06
USP39-208ENST00000455732 PLIN1O60240 522 aa21.65■■□□□ 1.06
USP39-208ENST00000455732 TTLL5Q6EMB2 1281 aa21.65■■□□□ 1.06
USP39-208ENST00000455732 VGLL2Q8N8G2 317 aa21.65■■□□□ 1.06
USP39-208ENST00000455732 KLHDC4Q8TBB5 520 aa21.65■■□□□ 1.06
USP39-208ENST00000455732 EYA2O00167 538 aa21.64■■□□□ 1.05
USP39-208ENST00000455732 VEGFBP49765 207 aa21.64■■□□□ 1.05
USP39-208ENST00000455732 ZNF804AQ7Z570 1209 aa21.64■■□□□ 1.05
USP39-208ENST00000455732 MYOZ2Q9NPC6 264 aa21.64■■□□□ 1.05
USP39-208ENST00000455732 ASTN2O75129 1339 aaPredicted RBP21.63■■□□□ 1.05
USP39-208ENST00000455732 CIAO1O76071 339 aa21.63■■□□□ 1.05
USP39-208ENST00000455732 GNAI2P04899 355 aa21.63■■□□□ 1.05
USP39-208ENST00000455732 RLBP1P12271 317 aa21.63■■□□□ 1.05
USP39-208ENST00000455732 IL1R1P14778 569 aa21.63■■□□□ 1.05
USP39-208ENST00000455732 GTF2IP78347 998 aa21.63■■□□□ 1.05
USP39-208ENST00000455732 DEFB115Q30KQ5 88 aa21.63■■□□□ 1.05
USP39-208ENST00000455732 METTL24Q5JXM2 366 aa21.63■■□□□ 1.05
USP39-208ENST00000455732 USP48Q86UV5 1035 aa21.63■■□□□ 1.05
USP39-208ENST00000455732 RCAN3Q9UKA8 241 aa21.63■■□□□ 1.05
USP39-208ENST00000455732 ABT1Q9ULW3 272 aaKnown RBP21.63■■□□□ 1.05
USP39-208ENST00000455732 CAPN15O75808 1086 aa21.62■■□□□ 1.05
USP39-208ENST00000455732 PDE8BO95263 885 aa21.62■■□□□ 1.05
USP39-208ENST00000455732 CELF2O95319 508 aaKnown RBP21.62■■□□□ 1.05
USP39-208ENST00000455732 DLK2Q6UY11 383 aa21.62■■□□□ 1.05
USP39-208ENST00000455732 KRT26Q7Z3Y9 468 aa21.62■■□□□ 1.05
USP39-208ENST00000455732 FBXW7Q969H0 707 aa21.62■■□□□ 1.05
USP39-208ENST00000455732 DCPSQ96C86 337 aaKnown RBP21.62■■□□□ 1.05
USP39-208ENST00000455732 COPRSQ9NQ92 184 aa21.62■■□□□ 1.05
USP39-208ENST00000455732 TLL2Q9Y6L7 1015 aa21.62■■□□□ 1.05
USP39-208ENST00000455732 SCARF1Q14162 830 aa21.61■■□□□ 1.05
USP39-208ENST00000455732 ATG9AQ7Z3C6 839 aa21.61■■□□□ 1.05
USP39-208ENST00000455732 GGA3Q9NZ52 723 aa21.61■■□□□ 1.05
USP39-208ENST00000455732 THSD7BQ9C0I4 1608 aa21.6■■□□□ 1.05
USP39-208ENST00000455732 MS4A1P11836 297 aa21.6■■□□□ 1.05
USP39-208ENST00000455732 MMP14P50281 582 aa21.6■■□□□ 1.05
USP39-208ENST00000455732 ITPRIPQ8IWB1 547 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms