RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 USP48Q86UV5 1035 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 SLC51AQ86UW1 340 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 REM2Q8IYK8 340 aaPredicted RBP9.01□□□□□ -0.97
VPS41-208ENST00000448833 DNAAF4Q8WXU2 420 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 PLA2G12BQ9BX93 195 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 ZNF408Q9H9D4 720 aa9.01□□□□□ -0.97
VPS41-208ENST00000448833 MED23Q9ULK4 1368 aa9□□□□□ -0.97
VPS41-208ENST00000448833 CCT4P50991 539 aaKnown RBP9□□□□□ -0.97
VPS41-208ENST00000448833 ZNF280AP59817 542 aaPredicted RBP9□□□□□ -0.97
VPS41-208ENST00000448833 GRM1Q13255 1194 aa9□□□□□ -0.97
VPS41-208ENST00000448833 CWF19L2Q2TBE0 894 aaKnown RBP9□□□□□ -0.97
VPS41-208ENST00000448833 KIF4BQ2VIQ3 1234 aa9□□□□□ -0.97
VPS41-208ENST00000448833 RBM26Q5T8P6 1007 aaKnown RBP9□□□□□ -0.97
VPS41-208ENST00000448833 UBE3BQ7Z3V4 1068 aa9□□□□□ -0.97
VPS41-208ENST00000448833 TRPM4Q8TD43 1214 aa9□□□□□ -0.97
VPS41-208ENST00000448833 COA1Q9GZY4 146 aa9□□□□□ -0.97
VPS41-208ENST00000448833 MINPP1Q9UNW1 487 aa9□□□□□ -0.97
VPS41-208ENST00000448833 PITPNM2Q9BZ72 1349 aa9□□□□□ -0.97
VPS41-208ENST00000448833 ANKRD18BA2A2Z9 1011 aa8.99□□□□□ -0.97
VPS41-208ENST00000448833 VAMP4O75379 141 aa8.99□□□□□ -0.97
VPS41-208ENST00000448833 CSF1RP07333 972 aa8.99□□□□□ -0.97
VPS41-208ENST00000448833 HSPA8P11142 646 aaKnown RBP8.99□□□□□ -0.97
VPS41-208ENST00000448833 HUNKP57058 714 aa8.99□□□□□ -0.97
VPS41-208ENST00000448833 FKBP1BP68106 108 aa8.99□□□□□ -0.97
VPS41-208ENST00000448833 CCDC184Q52MB2 194 aa8.99□□□□□ -0.97
VPS41-208ENST00000448833 STRIP1Q5VSL9 837 aa8.99□□□□□ -0.97
VPS41-208ENST00000448833 JARID2Q92833 1246 aaPredicted RBP8.99□□□□□ -0.97
VPS41-208ENST00000448833 CCDC85AQ96PX6 553 aaPredicted RBP8.99□□□□□ -0.97
VPS41-208ENST00000448833 GREM2Q9H772 168 aa8.99□□□□□ -0.97
VPS41-208ENST00000448833 GBA2Q9HCG7 927 aaPredicted RBP8.99□□□□□ -0.97
VPS41-208ENST00000448833 KCNQ5Q9NR82 932 aa8.99□□□□□ -0.97
VPS41-208ENST00000448833 FANCIQ9NVI1 1328 aa8.99□□□□□ -0.97
VPS41-208ENST00000448833 ITGA6P23229 1130 aa8.98□□□□□ -0.97
VPS41-208ENST00000448833 KCNJ4P48050 445 aa8.98□□□□□ -0.97
VPS41-208ENST00000448833 EXOSC9Q06265 439 aaKnown RBP8.98□□□□□ -0.97
VPS41-208ENST00000448833 FMR1Q06787 632 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS41-208ENST00000448833 IFIT5Q13325 482 aaKnown RBP8.98□□□□□ -0.97
VPS41-208ENST00000448833 SCARF1Q14162 830 aa8.98□□□□□ -0.97
VPS41-208ENST00000448833 RGMBQ6NW40 437 aa8.98□□□□□ -0.97
VPS41-208ENST00000448833 G2E3Q7L622 706 aa8.98□□□□□ -0.97
VPS41-208ENST00000448833 GMLQ99445 158 aa8.98□□□□□ -0.97
VPS41-208ENST00000448833 MYOZ2Q9NPC6 264 aa8.98□□□□□ -0.97
VPS41-208ENST00000448833 HDAC9Q9UKV0 1011 aa8.98□□□□□ -0.97
VPS41-208ENST00000448833 ZNF804BA4D1E1 1349 aa8.98□□□□□ -0.97
VPS41-208ENST00000448833 SPDYE4A6NLX3 237 aa8.97□□□□□ -0.97
VPS41-208ENST00000448833 NF2P35240 595 aa8.97□□□□□ -0.97
VPS41-208ENST00000448833 ZNF157P51786 506 aaPredicted RBP8.97□□□□□ -0.97
VPS41-208ENST00000448833 CCDC57Q2TAC2 916 aa8.97□□□□□ -0.97
VPS41-208ENST00000448833 TTLL5Q6EMB2 1281 aa8.97□□□□□ -0.97
VPS41-208ENST00000448833 GGA3Q9NZ52 723 aa8.97□□□□□ -0.97
VPS41-208ENST00000448833 SALL2Q9Y467 1007 aaPredicted RBP8.97□□□□□ -0.97
VPS41-208ENST00000448833 CASP8AP2Q9UKL3 1982 aa8.97□□□□□ -0.97
VPS41-208ENST00000448833 COL4A1P02462 1669 aa8.97□□□□□ -0.97
VPS41-208ENST00000448833 SHTN1A0MZ66 631 aa8.96□□□□□ -0.98
VPS41-208ENST00000448833 AOC2O75106 756 aa8.96□□□□□ -0.98
VPS41-208ENST00000448833 ALDH1L1O75891 902 aa8.96□□□□□ -0.98
VPS41-208ENST00000448833 CASP7P55210 303 aa8.96□□□□□ -0.98
VPS41-208ENST00000448833 TAF7LQ5H9L4 462 aa8.96□□□□□ -0.98
VPS41-208ENST00000448833 ANGEL2Q5VTE6 544 aaKnown RBP8.96□□□□□ -0.98
VPS41-208ENST00000448833 FAM9BQ8IZU0 186 aa8.96□□□□□ -0.98
VPS41-208ENST00000448833 SAGE1Q9NXZ1 904 aa8.96□□□□□ -0.98
VPS41-208ENST00000448833 C9orf78Q9NZ63 289 aaPredicted RBP8.96□□□□□ -0.98
VPS41-208ENST00000448833 GRM8O00222 908 aa8.95□□□□□ -0.98
VPS41-208ENST00000448833 EGFRP00533 1210 aa8.95□□□□□ -0.98
VPS41-208ENST00000448833 FAM161AQ3B820 660 aa8.95□□□□□ -0.98
VPS41-208ENST00000448833 DACT2Q5SW24 774 aa8.95□□□□□ -0.98
VPS41-208ENST00000448833 BEND3Q5T5X7 828 aa8.95□□□□□ -0.98
VPS41-208ENST00000448833 C15orf52Q6ZUT6 534 aaKnown RBP8.95□□□□□ -0.98
VPS41-208ENST00000448833 ZNF804AQ7Z570 1209 aa8.95□□□□□ -0.98
VPS41-208ENST00000448833 APOBEC3FQ8IUX4 373 aaKnown RBP8.95□□□□□ -0.98
VPS41-208ENST00000448833 FBXW7Q969H0 707 aa8.95□□□□□ -0.98
VPS41-208ENST00000448833 CDCA5Q96FF9 252 aa8.95□□□□□ -0.98
VPS41-208ENST00000448833 CHMP3Q9Y3E7 222 aa8.95□□□□□ -0.98
VPS41-208ENST00000448833 ECM29Q5VYK3 1845 aa8.95□□□□□ -0.98
VPS41-208ENST00000448833 PAPPA2Q9BXP8 1791 aa8.94□□□□□ -0.98
VPS41-208ENST00000448833 ADM5C9JUS6 153 aa8.94□□□□□ -0.98
VPS41-208ENST00000448833 MYO1BO43795 1136 aa8.94□□□□□ -0.98
VPS41-208ENST00000448833 FKBP1AP62942 108 aaKnown RBP8.94□□□□□ -0.98
VPS41-208ENST00000448833 CHRNDQ07001 517 aa8.94□□□□□ -0.98
VPS41-208ENST00000448833 LDHAL6AQ6ZMR3 332 aa8.94□□□□□ -0.98
VPS41-208ENST00000448833 SRCIN1Q9C0H9 1055 aa8.94□□□□□ -0.98
VPS41-208ENST00000448833 FAM155AB1AL88 458 aaPredicted RBP8.93□□□□□ -0.98
VPS41-208ENST00000448833 SLC10A3P09131 477 aa8.93□□□□□ -0.98
VPS41-208ENST00000448833 GTF2IP78347 998 aa8.93□□□□□ -0.98
VPS41-208ENST00000448833 FOXO4P98177 505 aa8.93□□□□□ -0.98
VPS41-208ENST00000448833 KIF23Q02241 960 aaPredicted RBP8.93□□□□□ -0.98
VPS41-208ENST00000448833 DLGAP5Q15398 846 aa8.93□□□□□ -0.98
VPS41-208ENST00000448833 SLC4A10Q6U841 1118 aa8.93□□□□□ -0.98
VPS41-208ENST00000448833 LMBR1LQ6UX01 489 aa8.93□□□□□ -0.98
VPS41-208ENST00000448833 ARMC9Q7Z3E5 817 aa8.93□□□□□ -0.98
VPS41-208ENST00000448833 ABHD8Q96I13 439 aa8.93□□□□□ -0.98
VPS41-208ENST00000448833 CD209Q9NNX6 404 aa8.93□□□□□ -0.98
VPS41-208ENST00000448833 CNNM1Q9NRU3 951 aa8.93□□□□□ -0.98
VPS41-208ENST00000448833 A0A1B0GUL6 1792 aa8.93□□□□□ -0.98
VPS41-208ENST00000448833 ZNF646O15015 1829 aaPredicted RBP8.93□□□□□ -0.98
VPS41-208ENST00000448833 COL1A1P02452 1464 aaPredicted RBP8.92□□□□□ -0.98
VPS41-208ENST00000448833 PTPRCP08575 1304 aa8.92□□□□□ -0.98
VPS41-208ENST00000448833 UNCXA6NJT0 531 aa8.92□□□□□ -0.98
VPS41-208ENST00000448833 E9PSI1 815 aa8.92□□□□□ -0.98
VPS41-208ENST00000448833 F6X3S4 739 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms