RNA–Protein interactions for RNA: ENST00000439029.5

SMPD4-208, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 4

Gene SMPD4, Length 566 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-208ENST00000439029 SLC9C1Q4G0N8 1177 aa12.84□□□□□ -0.35
SMPD4-208ENST00000439029 WNK4Q96J92 1243 aa12.84□□□□□ -0.35
SMPD4-208ENST00000439029 CCDC85AQ96PX6 553 aaPredicted RBP12.84□□□□□ -0.35
SMPD4-208ENST00000439029 ECM2O94769 699 aaPredicted RBP12.83□□□□□ -0.36
SMPD4-208ENST00000439029 SH3TC2Q8TF17 1288 aa12.83□□□□□ -0.36
SMPD4-208ENST00000439029 PODXL2Q9NZ53 605 aa12.83□□□□□ -0.36
SMPD4-208ENST00000439029 TSPYL4Q9UJ04 414 aa12.83□□□□□ -0.36
SMPD4-208ENST00000439029 DLG5Q8TDM6 1919 aa12.82□□□□□ -0.36
SMPD4-208ENST00000439029 SOX1O00570 391 aaPredicted RBP12.82□□□□□ -0.36
SMPD4-208ENST00000439029 IRS4O14654 1257 aaPredicted RBP12.82□□□□□ -0.36
SMPD4-208ENST00000439029 INHBEP58166 350 aa12.82□□□□□ -0.36
SMPD4-208ENST00000439029 GJA5P36382 358 aa12.81□□□□□ -0.36
SMPD4-208ENST00000439029 NBPF11Q86T75 865 aa12.81□□□□□ -0.36
SMPD4-208ENST00000439029 OGFOD1Q8N543 542 aa12.81□□□□□ -0.36
SMPD4-208ENST00000439029 LRCH3Q96II8 777 aa12.81□□□□□ -0.36
SMPD4-208ENST00000439029 PTPN18Q99952 460 aa12.81□□□□□ -0.36
SMPD4-208ENST00000439029 DACT2Q5SW24 774 aa12.8□□□□□ -0.36
SMPD4-208ENST00000439029 JARID2Q92833 1246 aaPredicted RBP12.8□□□□□ -0.36
SMPD4-208ENST00000439029 PSME4Q14997 1843 aa12.8□□□□□ -0.36
SMPD4-208ENST00000439029 A0A0C4DFX4 3053 aa12.8□□□□□ -0.36
SMPD4-208ENST00000439029 ZBTB48P10074 688 aaPredicted RBP12.79□□□□□ -0.36
SMPD4-208ENST00000439029 PPP2R1AP30153 589 aa12.79□□□□□ -0.36
SMPD4-208ENST00000439029 KRT24Q2M2I5 525 aa12.79□□□□□ -0.36
SMPD4-208ENST00000439029 OTUD7BQ6GQQ9 843 aa12.79□□□□□ -0.36
SMPD4-208ENST00000439029 APOBEC3FQ8IUX4 373 aaKnown RBP12.79□□□□□ -0.36
SMPD4-208ENST00000439029 KIAA0825Q8IV33 1275 aa12.79□□□□□ -0.36
SMPD4-208ENST00000439029 ISCA1Q9BUE6 129 aa12.79□□□□□ -0.36
SMPD4-208ENST00000439029 RANBP2P49792 3224 aaKnown RBP12.78□□□□□ -0.36
SMPD4-208ENST00000439029 NEFMP07197 916 aa12.78□□□□□ -0.36
SMPD4-208ENST00000439029 NFE2L2Q16236 605 aa12.78□□□□□ -0.36
SMPD4-208ENST00000439029 PODNQ7Z5L7 613 aa12.78□□□□□ -0.36
SMPD4-208ENST00000439029 SHISA4Q96DD7 197 aa12.78□□□□□ -0.36
SMPD4-208ENST00000439029 PCGF6Q9BYE7 350 aa12.78□□□□□ -0.36
SMPD4-208ENST00000439029 ARHGAP39Q9C0H5 1083 aa12.78□□□□□ -0.36
SMPD4-208ENST00000439029 DEFB129Q9H1M3 183 aa12.78□□□□□ -0.36
SMPD4-208ENST00000439029 CHPF2Q9P2E5 772 aa12.78□□□□□ -0.36
SMPD4-208ENST00000439029 MNX1P50219 401 aaPredicted RBP12.77□□□□□ -0.37
SMPD4-208ENST00000439029 MTFR1Q15390 333 aa12.77□□□□□ -0.37
SMPD4-208ENST00000439029 PLBD2Q8NHP8 589 aa12.77□□□□□ -0.37
SMPD4-208ENST00000439029 PRO3102Q9H379 93 aa12.77□□□□□ -0.37
SMPD4-208ENST00000439029 PCDHAC2Q9Y5I4 1007 aa12.77□□□□□ -0.37
SMPD4-208ENST00000439029 XDHP47989 1333 aa12.77□□□□□ -0.37
SMPD4-208ENST00000439029 SSC5DA1L4H1 1573 aa12.77□□□□□ -0.37
SMPD4-208ENST00000439029 ZSWIM8A7E2V4 1837 aa12.76□□□□□ -0.37
SMPD4-208ENST00000439029 COL6A3P12111 3177 aa12.76□□□□□ -0.37
SMPD4-208ENST00000439029 ATP2B4P23634 1241 aa12.76□□□□□ -0.37
SMPD4-208ENST00000439029 ANKRD13DQ6ZTN6 518 aa12.76□□□□□ -0.37
SMPD4-208ENST00000439029 ELP3Q9H9T3 547 aa12.76□□□□□ -0.37
SMPD4-208ENST00000439029 CLRN2A0PK11 232 aa12.75□□□□□ -0.37
SMPD4-208ENST00000439029 PPP1R12BO60237 982 aaPredicted RBP12.75□□□□□ -0.37
SMPD4-208ENST00000439029 TAF1CQ15572 869 aaPredicted RBP12.75□□□□□ -0.37
SMPD4-208ENST00000439029 MAP3K11Q16584 847 aa12.75□□□□□ -0.37
SMPD4-208ENST00000439029 NBPF12Q5TAG4 269 aaPredicted RBP12.75□□□□□ -0.37
SMPD4-208ENST00000439029 TXNRD3Q86VQ6 643 aa12.75□□□□□ -0.37
SMPD4-208ENST00000439029 CNKSR2Q8WXI2 1034 aa12.75□□□□□ -0.37
SMPD4-208ENST00000439029 USP2O75604 605 aaPredicted RBP12.74□□□□□ -0.37
SMPD4-208ENST00000439029 STRIP1Q5VSL9 837 aa12.74□□□□□ -0.37
SMPD4-208ENST00000439029 ANKRD18AQ8IVF6 992 aa12.74□□□□□ -0.37
SMPD4-208ENST00000439029 BRI3BPQ8WY22 251 aa12.74□□□□□ -0.37
SMPD4-208ENST00000439029 ZBED3Q96IU2 234 aaPredicted RBP12.74□□□□□ -0.37
SMPD4-208ENST00000439029 PLEKHF1Q96S99 279 aa12.74□□□□□ -0.37
SMPD4-208ENST00000439029 COL25A1Q9BXS0 654 aaPredicted RBP12.74□□□□□ -0.37
SMPD4-208ENST00000439029 AOX1Q06278 1338 aa12.73□□□□□ -0.37
SMPD4-208ENST00000439029 MYO3BQ8WXR4 1341 aa12.73□□□□□ -0.37
SMPD4-208ENST00000439029 TESPA1A2RU30 521 aaPredicted RBP12.73□□□□□ -0.37
SMPD4-208ENST00000439029 ZBTB7BO15156 539 aaPredicted RBP12.73□□□□□ -0.37
SMPD4-208ENST00000439029 KLRK1P26718 216 aa12.73□□□□□ -0.37
SMPD4-208ENST00000439029 ARHGEF6Q15052 776 aa12.73□□□□□ -0.37
SMPD4-208ENST00000439029 CCDC152Q4G0S7 254 aa12.73□□□□□ -0.37
SMPD4-208ENST00000439029 TTLL5Q6EMB2 1281 aa12.73□□□□□ -0.37
SMPD4-208ENST00000439029 Q7L0L9 218 aa12.73□□□□□ -0.37
SMPD4-208ENST00000439029 FAM43AQ8N2R8 423 aa12.73□□□□□ -0.37
SMPD4-208ENST00000439029 OPTNQ96CV9 577 aa12.73□□□□□ -0.37
SMPD4-208ENST00000439029 VEZTQ9HBM0 779 aa12.73□□□□□ -0.37
SMPD4-208ENST00000439029 ZFYVE28Q9HCC9 887 aa12.73□□□□□ -0.37
SMPD4-208ENST00000439029 STAP2Q9UGK3 403 aa12.73□□□□□ -0.37
SMPD4-208ENST00000439029 ZNF646O15015 1829 aaPredicted RBP12.72□□□□□ -0.37
SMPD4-208ENST00000439029 CCL15-CCL14A0A0B4J2E2 113 aa12.72□□□□□ -0.37
SMPD4-208ENST00000439029 F8W031 263 aaPredicted RBP12.72□□□□□ -0.37
SMPD4-208ENST00000439029 IREB2P48200 963 aaKnown RBP12.72□□□□□ -0.37
SMPD4-208ENST00000439029 GTF2IP78347 998 aa12.72□□□□□ -0.37
SMPD4-208ENST00000439029 DLGAP5Q15398 846 aa12.72□□□□□ -0.37
SMPD4-208ENST00000439029 CCL15Q16663 113 aa12.72□□□□□ -0.37
SMPD4-208ENST00000439029 MS4A4AQ96JQ5 239 aa12.72□□□□□ -0.37
SMPD4-208ENST00000439029 HTATIP2Q9BUP3 242 aa12.72□□□□□ -0.37
SMPD4-208ENST00000439029 NR2E3Q9Y5X4 410 aa12.72□□□□□ -0.37
SMPD4-208ENST00000439029 MED23Q9ULK4 1368 aa12.71□□□□□ -0.37
SMPD4-208ENST00000439029 MAPK8IP3Q9UPT6 1336 aa12.71□□□□□ -0.37
SMPD4-208ENST00000439029 SUPT20HL1Q3ZLR7 823 aa12.71□□□□□ -0.37
SMPD4-208ENST00000439029 HDGFL1Q5TGJ6 251 aa12.71□□□□□ -0.37
SMPD4-208ENST00000439029 ANKRD13AQ8IZ07 590 aa12.71□□□□□ -0.37
SMPD4-208ENST00000439029 ZBTB38Q8NAP3 1195 aaPredicted RBP12.71□□□□□ -0.37
SMPD4-208ENST00000439029 COA1Q9GZY4 146 aa12.71□□□□□ -0.37
SMPD4-208ENST00000439029 MINPP1Q9UNW1 487 aa12.71□□□□□ -0.37
SMPD4-208ENST00000439029 LAS1LQ9Y4W2 734 aaKnown RBP12.71□□□□□ -0.37
SMPD4-208ENST00000439029 CCT4P50991 539 aaKnown RBP12.7□□□□□ -0.38
SMPD4-208ENST00000439029 RIPK4P57078 832 aa12.7□□□□□ -0.38
SMPD4-208ENST00000439029 DEFB123Q8N688 67 aa12.7□□□□□ -0.38
SMPD4-208ENST00000439029 MYD88Q99836 296 aa12.7□□□□□ -0.38
SMPD4-208ENST00000439029 PDE8AO60658 829 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms