RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 ATP2B1P20020 1258 aa15.15■□□□□ 0.02
PTCH1-207ENST00000429896 HAND2P61296 217 aa15.15■□□□□ 0.02
PTCH1-207ENST00000429896 DALRD3Q5D0E6 543 aaKnown RBP15.15■□□□□ 0.02
PTCH1-207ENST00000429896 BICD2Q8TD16 824 aa15.15■□□□□ 0.02
PTCH1-207ENST00000429896 SDSP20132 328 aa15.15■□□□□ 0.02
PTCH1-207ENST00000429896 DBNDD2Q9BQY9 259 aa15.15■□□□□ 0.02
PTCH1-207ENST00000429896 GREM2Q9H772 168 aa15.15■□□□□ 0.02
PTCH1-207ENST00000429896 CCDC196A0A1B0GTZ2 297 aa15.14■□□□□ 0.02
PTCH1-207ENST00000429896 DPY19L2Q6NUT2 758 aa15.14■□□□□ 0.02
PTCH1-207ENST00000429896 CATIPQ7Z7H3 387 aa15.14■□□□□ 0.02
PTCH1-207ENST00000429896 MYO5BQ9ULV0 1848 aa15.14■□□□□ 0.01
PTCH1-207ENST00000429896 NPR1P16066 1061 aa15.14■□□□□ 0.01
PTCH1-207ENST00000429896 CCDC178Q5BJE1 867 aa15.14■□□□□ 0.01
PTCH1-207ENST00000429896 TRMT2AQ8IZ69 625 aaKnown RBP15.14■□□□□ 0.01
PTCH1-207ENST00000429896 TBC1D22AQ8WUA7 517 aa15.14■□□□□ 0.01
PTCH1-207ENST00000429896 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.14■□□□□ 0.016e-10■■■■■ 141.3
PTCH1-207ENST00000429896 BBOX1O75936 387 aa15.14■□□□□ 0.01
PTCH1-207ENST00000429896 TSPY3P0CV98 308 aa15.14■□□□□ 0.01
PTCH1-207ENST00000429896 TSPY8P0CW00 308 aa15.14■□□□□ 0.01
PTCH1-207ENST00000429896 NCOA7Q8NI08 942 aa15.14■□□□□ 0.01
PTCH1-207ENST00000429896 KAT14Q9H8E8 782 aa15.14■□□□□ 0.01
PTCH1-207ENST00000429896 HMG20BQ9P0W2 317 aa15.14■□□□□ 0.01
PTCH1-207ENST00000429896 TBC1D9Q6ZT07 1266 aa15.14■□□□□ 0.01
PTCH1-207ENST00000429896 SUSD4Q5VX71 490 aa15.14■□□□□ 0.01
PTCH1-207ENST00000429896 CHRNDQ07001 517 aa15.13■□□□□ 0.01
PTCH1-207ENST00000429896 SKAP1Q86WV1 359 aa15.13■□□□□ 0.01
PTCH1-207ENST00000429896 KRT23Q9C075 422 aa15.13■□□□□ 0.01
PTCH1-207ENST00000429896 NMIQ13287 307 aaPredicted RBP15.13■□□□□ 0.01
PTCH1-207ENST00000429896 XDHP47989 1333 aa15.13■□□□□ 0.01
PTCH1-207ENST00000429896 TTLL5Q6EMB2 1281 aa15.13■□□□□ 0.01
PTCH1-207ENST00000429896 RC3H1Q5TC82 1133 aaKnown RBP15.13■□□□□ 0.01
PTCH1-207ENST00000429896 ZNF521Q96K83 1311 aa15.13■□□□□ 0.01
PTCH1-207ENST00000429896 SPATA5Q8NB90 893 aa15.13■□□□□ 0.01
PTCH1-207ENST00000429896 MCM9Q9NXL9 1143 aa15.13■□□□□ 0.01
PTCH1-207ENST00000429896 TPM1P09493 284 aa15.12■□□□□ 0.01
PTCH1-207ENST00000429896 CARMIL3Q8ND23 1372 aa15.12■□□□□ 0.01
PTCH1-207ENST00000429896 PSDA5PKW4 1024 aaPredicted RBP15.12■□□□□ 0.01
PTCH1-207ENST00000429896 GRM1Q13255 1194 aa15.12■□□□□ 0.01
PTCH1-207ENST00000429896 HLFQ16534 295 aa15.12■□□□□ 0.01
PTCH1-207ENST00000429896 MASTLQ96GX5 879 aa15.12■□□□□ 0.01
PTCH1-207ENST00000429896 ZNF396Q96N95 335 aaPredicted RBP15.12■□□□□ 0.01
PTCH1-207ENST00000429896 BRPF1P55201 1214 aaPredicted RBP15.12■□□□□ 0.01
PTCH1-207ENST00000429896 TEX11Q8IYF3 940 aa15.12■□□□□ 0.01
PTCH1-207ENST00000429896 CNNM2Q9H8M5 875 aa15.12■□□□□ 0.01
PTCH1-207ENST00000429896 NOL7Q9UMY1 257 aaKnown RBP15.12■□□□□ 0.01
PTCH1-207ENST00000429896 TMEM67Q5HYA8 995 aa15.11■□□□□ 0.01
PTCH1-207ENST00000429896 H7C1D1 291 aa15.11■□□□□ 0.01
PTCH1-207ENST00000429896 ZNF76P36508 570 aa15.11■□□□□ 0.01
PTCH1-207ENST00000429896 CCDC125Q86Z20 511 aa15.11■□□□□ 0.01
PTCH1-207ENST00000429896 CERS3Q8IU89 383 aa15.11■□□□□ 0.01
PTCH1-207ENST00000429896 K7ELQ4 463 aaPredicted RBP15.11■□□□□ 0.01
PTCH1-207ENST00000429896 NKX1-1Q15270 411 aaPredicted RBP15.11■□□□□ 0.01
PTCH1-207ENST00000429896 CCDC93Q567U6 631 aa15.11■□□□□ 0.01
PTCH1-207ENST00000429896 WDR78Q5VTH9 848 aa15.11■□□□□ 0.01
PTCH1-207ENST00000429896 R3HDM1Q15032 1099 aaKnown RBP15.11■□□□□ 0.01
PTCH1-207ENST00000429896 SMC5Q8IY18 1101 aa15.11■□□□□ 0.01
PTCH1-207ENST00000429896 ZFYVE27Q5T4F4 411 aa15.11■□□□□ 0.01
PTCH1-207ENST00000429896 TTLL6Q8N841 843 aa15.11■□□□□ 0.01
PTCH1-207ENST00000429896 ESR2Q92731 530 aa15.11■□□□□ 0.01
PTCH1-207ENST00000429896 PIM2Q9P1W9 311 aa15.11■□□□□ 0.01
PTCH1-207ENST00000429896 GTF2IP78347 998 aa15.1■□□□□ 0.01
PTCH1-207ENST00000429896 TBC1D9BQ66K14 1250 aa15.1■□□□□ 0.01
PTCH1-207ENST00000429896 TTC6Q86TZ1 520 aa15.1■□□□□ 0.01
PTCH1-207ENST00000429896 HOMER1Q86YM7 354 aa15.1■□□□□ 0.01
PTCH1-207ENST00000429896 CDK5RAP3Q96JB5 506 aa15.1■□□□□ 0.01
PTCH1-207ENST00000429896 GOLGA8AA7E2F4 631 aa15.1■□□□□ 0.01
PTCH1-207ENST00000429896 GOLGA8BA8MQT2 603 aa15.1■□□□□ 0.01
PTCH1-207ENST00000429896 CCDC73Q6ZRK6 1079 aa15.1■□□□□ 0.01
PTCH1-207ENST00000429896 KIF5BP33176 963 aa15.1■□□□□ 0.01
PTCH1-207ENST00000429896 DOK7Q18PE1 504 aa15.1■□□□□ 0.01
PTCH1-207ENST00000429896 LEMD3Q9Y2U8 911 aa15.1■□□□□ 0.01
PTCH1-207ENST00000429896 ZNF804BA4D1E1 1349 aa15.1■□□□□ 0.01
PTCH1-207ENST00000429896 COL5A2P05997 1499 aaPredicted RBP15.1■□□□□ 0.01
PTCH1-207ENST00000429896 FNBP4Q8N3X1 1017 aaPredicted RBP15.1■□□□□ 0.01
PTCH1-207ENST00000429896 CC2D2BQ6DHV5 1058 aa15.09■□□□□ 0.01
PTCH1-207ENST00000429896 MBD4O95243 580 aa15.09■□□□□ 0.01
PTCH1-207ENST00000429896 GRAPQ13588 217 aa15.09■□□□□ 0.01
PTCH1-207ENST00000429896 DLGAP5Q15398 846 aa15.09■□□□□ 0.01
PTCH1-207ENST00000429896 EZH2Q15910 746 aaKnown RBP15.09■□□□□ 0.01
PTCH1-207ENST00000429896 LINC00116Q8NCU8 138 aa15.09■□□□□ 0.01
PTCH1-207ENST00000429896 GRAPLQ8TC17 118 aaPredicted RBP15.09■□□□□ 0.01
PTCH1-207ENST00000429896 CUL5Q93034 780 aa15.09■□□□□ 0.01
PTCH1-207ENST00000429896 NEK1Q96PY6 1258 aa15.09■□□□□ 0.01
PTCH1-207ENST00000429896 SPON1Q9HCB6 807 aa15.09■□□□□ 0.01
PTCH1-207ENST00000429896 HELLSQ9NRZ9 838 aa15.09■□□□□ 0.01
PTCH1-207ENST00000429896 SSH3Q8TE77 659 aa15.09■□□□□ 0.01
PTCH1-207ENST00000429896 HOOK2Q96ED9 719 aa15.09■□□□□ 0.01
PTCH1-207ENST00000429896 EAPPQ56P03 285 aaPredicted RBP15.09■□□□□ 0.01
PTCH1-207ENST00000429896 SEC31BQ9NQW1 1179 aa15.09■□□□□ 0.01
PTCH1-207ENST00000429896 CIAO1O76071 339 aa15.08■□□□□ 0.01
PTCH1-207ENST00000429896 ZNF771Q7L3S4 317 aaPredicted RBP15.08■□□□□ 0.01
PTCH1-207ENST00000429896 PLEKHM2Q8IWE5 1019 aa15.08■□□□□ 0.01
PTCH1-207ENST00000429896 UPF3BQ9BZI7 483 aaKnown RBP15.08■□□□□ 0.01
PTCH1-207ENST00000429896 LRRC24Q50LG9 513 aa15.08■□□□□ 0.01
PTCH1-207ENST00000429896 RTKN2Q8IZC4 609 aa15.08■□□□□ 0.01
PTCH1-207ENST00000429896 TXLNAP40222 546 aa15.08■□□□□ 0
PTCH1-207ENST00000429896 SKOR2Q2VWA4 1001 aaPredicted RBP15.08■□□□□ 0
PTCH1-207ENST00000429896 LARP1BQ659C4 914 aaKnown RBP15.08■□□□□ 0
PTCH1-207ENST00000429896 UBE4AQ14139 1066 aa15.08■□□□□ 0
PTCH1-207ENST00000429896 TNIP1Q15025 636 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms