RNA–Protein interactions for RNA: ENST00000425413.5

UBR4-207, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 2,954 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-207ENST00000425413 DHX32Q7L7V1 743 aaKnown RBP13.69□□□□□ -0.22
UBR4-207ENST00000425413 TJP1Q07157 1748 aa13.69□□□□□ -0.22
UBR4-207ENST00000425413 SHANK3Q9BYB0 1731 aa13.69□□□□□ -0.22
UBR4-207ENST00000425413 UBN2Q6ZU65 1347 aa13.69□□□□□ -0.22
UBR4-207ENST00000425413 UBR2Q8IWV8 1755 aa13.69□□□□□ -0.22
UBR4-207ENST00000425413 ABCA3Q99758 1704 aa13.68□□□□□ -0.22
UBR4-207ENST00000425413 ATP6V1AP38606 617 aa13.68□□□□□ -0.22
UBR4-207ENST00000425413 MCAMP43121 646 aa13.68□□□□□ -0.22
UBR4-207ENST00000425413 KRT85P78386 507 aa13.68□□□□□ -0.22
UBR4-207ENST00000425413 DDB1Q16531 1140 aa13.68□□□□□ -0.22
UBR4-207ENST00000425413 SMIM5Q71RC9 77 aa13.68□□□□□ -0.22
UBR4-207ENST00000425413 TMEM87AQ8NBN3 555 aa13.68□□□□□ -0.22
UBR4-207ENST00000425413 RIPOR2Q9Y4F9 1068 aa13.68□□□□□ -0.22
UBR4-207ENST00000425413 PHF14O94880 888 aa13.68□□□□□ -0.22
UBR4-207ENST00000425413 DSCC1Q9BVC3 393 aa13.68□□□□□ -0.22
UBR4-207ENST00000425413 NUP188Q5SRE5 1749 aa13.68□□□□□ -0.22
UBR4-207ENST00000425413 GOLGA6L4A6NEF3 574 aa13.67□□□□□ -0.22
UBR4-207ENST00000425413 KDM4AO75164 1064 aa13.67□□□□□ -0.22
UBR4-207ENST00000425413 APPP05067 770 aa13.67□□□□□ -0.22
UBR4-207ENST00000425413 PHKA1P46020 1223 aa13.67□□□□□ -0.22
UBR4-207ENST00000425413 SEC31BQ9NQW1 1179 aa13.67□□□□□ -0.22
UBR4-207ENST00000425413 LIG1P18858 919 aa13.67□□□□□ -0.22
UBR4-207ENST00000425413 SLC9C2Q5TAH2 1124 aa13.67□□□□□ -0.22
UBR4-207ENST00000425413 KCNQ2O43526 872 aa13.66□□□□□ -0.22
UBR4-207ENST00000425413 FGAP02671 866 aa13.66□□□□□ -0.22
UBR4-207ENST00000425413 SPATA32Q96LK8 384 aa13.66□□□□□ -0.22
UBR4-207ENST00000425413 FTOQ9C0B1 505 aaKnown RBP eCLIP13.66□□□□□ -0.22
UBR4-207ENST00000425413 USP25Q9UHP3 1055 aa13.66□□□□□ -0.22
UBR4-207ENST00000425413 DENND2AQ9ULE3 1009 aa13.66□□□□□ -0.22
UBR4-207ENST00000425413 RFX7Q2KHR2 1363 aa13.66□□□□□ -0.22
UBR4-207ENST00000425413 FOXP2O15409 715 aa13.66□□□□□ -0.22
UBR4-207ENST00000425413 SUSD4Q5VX71 490 aa13.66□□□□□ -0.22
UBR4-207ENST00000425413 PTPDC1A2A3K4 754 aa13.65□□□□□ -0.22
UBR4-207ENST00000425413 GPAA1O43292 621 aa13.65□□□□□ -0.22
UBR4-207ENST00000425413 PTMAP06454 111 aaKnown RBP13.65□□□□□ -0.22
UBR4-207ENST00000425413 CRKLP46109 303 aaKnown RBP13.65□□□□□ -0.22
UBR4-207ENST00000425413 PLA2G12BQ9BX93 195 aa13.65□□□□□ -0.22
UBR4-207ENST00000425413 PIH1D3Q9NQM4 214 aaKnown RBP13.65□□□□□ -0.22
UBR4-207ENST00000425413 PDE8AO60658 829 aa13.65□□□□□ -0.22
UBR4-207ENST00000425413 CSPP1Q1MSJ5 1256 aa13.65□□□□□ -0.22
UBR4-207ENST00000425413 CKAP2LQ8IYA6 745 aa13.65□□□□□ -0.22
UBR4-207ENST00000425413 STK11IPQ8N1F8 1099 aa13.65□□□□□ -0.22
UBR4-207ENST00000425413 MARCH10Q8NA82 808 aaPredicted RBP13.65□□□□□ -0.22
UBR4-207ENST00000425413 ALDH8A1Q9H2A2 487 aaPredicted RBP13.65□□□□□ -0.22
UBR4-207ENST00000425413 RIC1Q4ADV7 1423 aa13.65□□□□□ -0.22
UBR4-207ENST00000425413 CTDNEP1O95476 244 aa13.65□□□□□ -0.22
UBR4-207ENST00000425413 MSNP26038 577 aaKnown RBP13.65□□□□□ -0.22
UBR4-207ENST00000425413 OTUD7BQ6GQQ9 843 aa13.65□□□□□ -0.22
UBR4-207ENST00000425413 IQSEC3Q9UPP2 1182 aaPredicted RBP13.65□□□□□ -0.22
UBR4-207ENST00000425413 PAPPAQ13219 1627 aa13.65□□□□□ -0.23
UBR4-207ENST00000425413 DISP2A7MBM2 1401 aa13.64□□□□□ -0.23
UBR4-207ENST00000425413 HMGB1P09429 215 aaKnown RBP13.64□□□□□ -0.23
UBR4-207ENST00000425413 NSUN7Q8NE18 718 aaKnown RBP13.64□□□□□ -0.23
UBR4-207ENST00000425413 PDE8BO95263 885 aa13.64□□□□□ -0.23
UBR4-207ENST00000425413 IL6STP40189 918 aaPredicted RBP13.64□□□□□ -0.23
UBR4-207ENST00000425413 EXOSC10Q01780 885 aaKnown RBP13.64□□□□□ -0.23
UBR4-207ENST00000425413 ITPK1Q13572 414 aa13.64□□□□□ -0.23
UBR4-207ENST00000425413 IMMTQ16891 758 aaKnown RBP13.64□□□□□ -0.23
UBR4-207ENST00000425413 CCDC102BQ68D86 513 aa13.64□□□□□ -0.23
UBR4-207ENST00000425413 ZSCAN30Q86W11 494 aa13.64□□□□□ -0.23
UBR4-207ENST00000425413 BICD2Q8TD16 824 aa13.64□□□□□ -0.23
UBR4-207ENST00000425413 APPBP2Q92624 585 aa13.64□□□□□ -0.23
UBR4-207ENST00000425413 CCDC87Q9NVE4 849 aa13.64□□□□□ -0.23
UBR4-207ENST00000425413 DACT1Q9NYF0 836 aa13.64□□□□□ -0.23
UBR4-207ENST00000425413 LOC102724428A0A0B4J2F2 783 aa13.63□□□□□ -0.23
UBR4-207ENST00000425413 PFKFB2O60825 505 aa13.63□□□□□ -0.23
UBR4-207ENST00000425413 PDIA3P30101 505 aaKnown RBP13.63□□□□□ -0.23
UBR4-207ENST00000425413 SIK1P57059 783 aa13.63□□□□□ -0.23
UBR4-207ENST00000425413 INTS5Q6P9B9 1019 aaKnown RBP13.63□□□□□ -0.23
UBR4-207ENST00000425413 LEO1Q8WVC0 666 aaPredicted RBP13.63□□□□□ -0.23
UBR4-207ENST00000425413 WWC3Q9ULE0 1092 aa13.63□□□□□ -0.23
UBR4-207ENST00000425413 NIP7Q9Y221 180 aaKnown RBP eCLIP13.63□□□□□ -0.23
UBR4-207ENST00000425413 CDHR2Q9BYE9 1310 aa13.63□□□□□ -0.23
UBR4-207ENST00000425413 BICDL1Q6ZP65 573 aa13.63□□□□□ -0.23
UBR4-207ENST00000425413 PDLIM2Q96JY6 352 aa13.63□□□□□ -0.23
UBR4-207ENST00000425413 MPHOSPH8Q99549 860 aa13.63□□□□□ -0.23
UBR4-207ENST00000425413 INCENPQ9NQS7 918 aa13.63□□□□□ -0.23
UBR4-207ENST00000425413 PRC1O43663 620 aa13.62□□□□□ -0.23
UBR4-207ENST00000425413 RXRAP19793 462 aa13.62□□□□□ -0.23
UBR4-207ENST00000425413 NKX2-3Q8TAU0 364 aa13.62□□□□□ -0.23
UBR4-207ENST00000425413 GJB4Q9NTQ9 266 aa13.62□□□□□ -0.23
UBR4-207ENST00000425413 NHSL1Q5SYE7 1610 aa13.62□□□□□ -0.23
UBR4-207ENST00000425413 LRRFIP1Q32MZ4 808 aaKnown RBP13.62□□□□□ -0.23
UBR4-207ENST00000425413 RALYLQ86SE5 291 aaKnown RBP13.62□□□□□ -0.23
UBR4-207ENST00000425413 ZNF34Q8IZ26 560 aa13.62□□□□□ -0.23
UBR4-207ENST00000425413 ZNF532Q9HCE3 1301 aa13.62□□□□□ -0.23
UBR4-207ENST00000425413 KLF18A0A0U1RQI7 1052 aa13.62□□□□□ -0.23
UBR4-207ENST00000425413 ZNF213O14771 459 aa13.62□□□□□ -0.23
UBR4-207ENST00000425413 ZFYP08048 801 aaPredicted RBP13.62□□□□□ -0.23
UBR4-207ENST00000425413 EIF5P55010 431 aaKnown RBP13.62□□□□□ -0.23
UBR4-207ENST00000425413 RESTQ13127 1097 aa13.62□□□□□ -0.23
UBR4-207ENST00000425413 VGLL2Q8N8G2 317 aa13.62□□□□□ -0.23
UBR4-207ENST00000425413 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.62□□□□□ -0.23
UBR4-207ENST00000425413 ZNF830Q96NB3 372 aaPredicted RBP13.62□□□□□ -0.23
UBR4-207ENST00000425413 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.62□□□□□ -0.231e-10■■■■□ 20.3
UBR4-207ENST00000425413 FBXO3Q9UK99 471 aa13.62□□□□□ -0.23
UBR4-207ENST00000425413 SPATA31A1Q5TZJ5 1347 aa13.61□□□□□ -0.23
UBR4-207ENST00000425413 WTIPA6NIX2 430 aaPredicted RBP13.61□□□□□ -0.23
UBR4-207ENST00000425413 CTNNA3Q9UI47 895 aa13.61□□□□□ -0.23
UBR4-207ENST00000425413 GOLGA8BA8MQT2 603 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms