RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 USPL1Q5W0Q7 1092 aa12.95□□□□□ -0.34
DDX56-203ENST00000421223 SEC31BQ9NQW1 1179 aa12.95□□□□□ -0.34
DDX56-203ENST00000421223 PTMAP06454 111 aaKnown RBP12.95□□□□□ -0.34
DDX56-203ENST00000421223 CLCN1P35523 988 aa12.95□□□□□ -0.34
DDX56-203ENST00000421223 UBE2HP62256 183 aa12.95□□□□□ -0.34
DDX56-203ENST00000421223 RBM10P98175 930 aaKnown RBP12.95□□□□□ -0.34
DDX56-203ENST00000421223 SLC9C2Q5TAH2 1124 aa12.95□□□□□ -0.34
DDX56-203ENST00000421223 DHX32Q7L7V1 743 aaKnown RBP12.95□□□□□ -0.34
DDX56-203ENST00000421223 MPHOSPH8Q99549 860 aa12.95□□□□□ -0.34
DDX56-203ENST00000421223 KRT85P78386 507 aa12.94□□□□□ -0.34
DDX56-203ENST00000421223 TRIM28Q13263 835 aaKnown RBP12.94□□□□□ -0.34
DDX56-203ENST00000421223 HOMEZQ8IX15 550 aa12.94□□□□□ -0.34
DDX56-203ENST00000421223 NAP1L5Q96NT1 182 aaPredicted RBP12.94□□□□□ -0.34
DDX56-203ENST00000421223 MCAMP43121 646 aa12.94□□□□□ -0.34
DDX56-203ENST00000421223 PHKA1P46020 1223 aa12.94□□□□□ -0.34
DDX56-203ENST00000421223 CRKLP46109 303 aaKnown RBP12.94□□□□□ -0.34
DDX56-203ENST00000421223 SCRN1Q12765 414 aa12.94□□□□□ -0.34
DDX56-203ENST00000421223 PHF14O94880 888 aa12.94□□□□□ -0.34
DDX56-203ENST00000421223 CSF1RP07333 972 aa12.94□□□□□ -0.34
DDX56-203ENST00000421223 FAM182BQ5T319 152 aa12.94□□□□□ -0.34
DDX56-203ENST00000421223 SUSD4Q5VX71 490 aa12.94□□□□□ -0.34
DDX56-203ENST00000421223 GTF3C6Q969F1 213 aa12.94□□□□□ -0.34
DDX56-203ENST00000421223 NIP7Q9Y221 180 aaKnown RBP eCLIP12.94□□□□□ -0.34
DDX56-203ENST00000421223 RIPOR2Q9Y4F9 1068 aa12.94□□□□□ -0.34
DDX56-203ENST00000421223 PARP4Q9UKK3 1724 aaKnown RBP12.93□□□□□ -0.34
DDX56-203ENST00000421223 UBN2Q6ZU65 1347 aa12.93□□□□□ -0.34
DDX56-203ENST00000421223 SH3TC1Q8TE82 1336 aa12.93□□□□□ -0.34
DDX56-203ENST00000421223 PDE8AO60658 829 aa12.93□□□□□ -0.34
DDX56-203ENST00000421223 FGAP02671 866 aa12.93□□□□□ -0.34
DDX56-203ENST00000421223 FAM98CQ17RN3 349 aaKnown RBP12.93□□□□□ -0.34
DDX56-203ENST00000421223 PAXIP1Q6ZW49 1069 aaPredicted RBP12.93□□□□□ -0.34
DDX56-203ENST00000421223 TTC6Q86TZ1 520 aa12.93□□□□□ -0.34
DDX56-203ENST00000421223 MARCH10Q8NA82 808 aaPredicted RBP12.93□□□□□ -0.34
DDX56-203ENST00000421223 SPATA32Q96LK8 384 aa12.93□□□□□ -0.34
DDX56-203ENST00000421223 TNS2Q63HR2 1409 aa12.93□□□□□ -0.34
DDX56-203ENST00000421223 CCDC183Q5T5S1 534 aa12.93□□□□□ -0.34
DDX56-203ENST00000421223 LOC102724428A0A0B4J2F2 783 aa12.92□□□□□ -0.34
DDX56-203ENST00000421223 GPAA1O43292 621 aa12.92□□□□□ -0.34
DDX56-203ENST00000421223 GTF2E1P29083 439 aaPredicted RBP12.92□□□□□ -0.34
DDX56-203ENST00000421223 SIK1P57059 783 aa12.92□□□□□ -0.34
DDX56-203ENST00000421223 IMMTQ16891 758 aaKnown RBP12.92□□□□□ -0.34
DDX56-203ENST00000421223 LRRFIP1Q32MZ4 808 aaKnown RBP12.92□□□□□ -0.34
DDX56-203ENST00000421223 TSGA10IPQ3SY00 556 aa12.92□□□□□ -0.34
DDX56-203ENST00000421223 CCDC24Q8N4L8 307 aa12.92□□□□□ -0.34
DDX56-203ENST00000421223 DSCC1Q9BVC3 393 aa12.92□□□□□ -0.34
DDX56-203ENST00000421223 CCDC87Q9NVE4 849 aa12.92□□□□□ -0.34
DDX56-203ENST00000421223 BCL9O00512 1426 aa12.92□□□□□ -0.34
DDX56-203ENST00000421223 MSNP26038 577 aaKnown RBP12.92□□□□□ -0.34
DDX56-203ENST00000421223 CSPP1Q1MSJ5 1256 aa12.92□□□□□ -0.34
DDX56-203ENST00000421223 RALYLQ86SE5 291 aaKnown RBP12.92□□□□□ -0.34
DDX56-203ENST00000421223 CKAP2LQ8IYA6 745 aa12.92□□□□□ -0.34
DDX56-203ENST00000421223 BICD2Q8TD16 824 aa12.92□□□□□ -0.34
DDX56-203ENST00000421223 ABCC6O95255 1503 aa12.92□□□□□ -0.34
DDX56-203ENST00000421223 PDE8BO95263 885 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 IL6STP40189 918 aaPredicted RBP12.91□□□□□ -0.34
DDX56-203ENST00000421223 CCDC102BQ68D86 513 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 OTUD7BQ6GQQ9 843 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 C8orf37Q96NL8 207 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 TOMM22Q9NS69 142 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 ZNF213O14771 459 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 ITPK1Q13572 414 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.91□□□□□ -0.342e-6■■■□□ 16
DDX56-203ENST00000421223 DENND2AQ9ULE3 1009 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 PTPDC1A2A3K4 754 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 HMGB1P09429 215 aaKnown RBP12.91□□□□□ -0.34
DDX56-203ENST00000421223 LIG1P18858 919 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 RXRAP19793 462 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 NGLY1Q96IV0 654 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 FTOQ9C0B1 505 aaKnown RBP eCLIP12.91□□□□□ -0.34
DDX56-203ENST00000421223 PIH1D3Q9NQM4 214 aaKnown RBP12.91□□□□□ -0.34
DDX56-203ENST00000421223 USP25Q9UHP3 1055 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 PLEKHG2Q9H7P9 1386 aa12.91□□□□□ -0.34
DDX56-203ENST00000421223 APPBP2Q92624 585 aa12.9□□□□□ -0.34
DDX56-203ENST00000421223 UTP14AQ9BVJ6 771 aaKnown RBP12.9□□□□□ -0.34
DDX56-203ENST00000421223 INCENPQ9NQS7 918 aa12.9□□□□□ -0.34
DDX56-203ENST00000421223 PALLDQ8WX93 1383 aa12.9□□□□□ -0.34
DDX56-203ENST00000421223 GLI3P10071 1580 aa12.9□□□□□ -0.34
DDX56-203ENST00000421223 CCDC144CPQ8IYA2 1237 aa12.9□□□□□ -0.34
DDX56-203ENST00000421223 PPP1R9BQ96SB3 815 aa12.9□□□□□ -0.34
DDX56-203ENST00000421223 CTNNA3Q9UI47 895 aa12.9□□□□□ -0.34
DDX56-203ENST00000421223 WWC3Q9ULE0 1092 aa12.9□□□□□ -0.34
DDX56-203ENST00000421223 PRC1O43663 620 aa12.89□□□□□ -0.35
DDX56-203ENST00000421223 INTS5Q6P9B9 1019 aaKnown RBP12.89□□□□□ -0.35
DDX56-203ENST00000421223 PLA2G12BQ9BX93 195 aa12.89□□□□□ -0.35
DDX56-203ENST00000421223 ZNF532Q9HCE3 1301 aa12.89□□□□□ -0.35
DDX56-203ENST00000421223 KLF18A0A0U1RQI7 1052 aa12.89□□□□□ -0.35
DDX56-203ENST00000421223 SPATA31A1Q5TZJ5 1347 aa12.89□□□□□ -0.35
DDX56-203ENST00000421223 CPLX1O14810 134 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 ZFYP08048 801 aaPredicted RBP12.88□□□□□ -0.35
DDX56-203ENST00000421223 BCAMP50895 628 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 EIF5P55010 431 aaKnown RBP12.88□□□□□ -0.35
DDX56-203ENST00000421223 TRDNQ13061 729 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 RRP12Q5JTH9 1297 aaKnown RBP12.88□□□□□ -0.35
DDX56-203ENST00000421223 AIDAQ96BJ3 306 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 GJB4Q9NTQ9 266 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 DACT1Q9NYF0 836 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 ABCF2Q9UG63 623 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 NPHP1O15259 732 aa12.88□□□□□ -0.35
DDX56-203ENST00000421223 PDIA3P30101 505 aaKnown RBP12.88□□□□□ -0.35
DDX56-203ENST00000421223 MAGEB6Q8N7X4 407 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms