RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 TTC6Q86TZ1 520 aa17.97■□□□□ 0.47
PHRF1-203ENST00000416188 RAB11FIP4Q86YS3 637 aa17.97■□□□□ 0.47
PHRF1-203ENST00000416188 TEX11Q8IYF3 940 aa17.97■□□□□ 0.47
PHRF1-203ENST00000416188 ZNF397Q8NF99 534 aaPredicted RBP17.97■□□□□ 0.47
PHRF1-203ENST00000416188 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.97■□□□□ 0.471e-7■□□□□ 10.8
PHRF1-203ENST00000416188 CRKLP46109 303 aaKnown RBP17.97■□□□□ 0.47
PHRF1-203ENST00000416188 KCNQ4P56696 695 aa17.97■□□□□ 0.47
PHRF1-203ENST00000416188 PUM3Q15397 648 aaKnown RBP17.97■□□□□ 0.47
PHRF1-203ENST00000416188 MAP3K4Q9Y6R4 1608 aa17.97■□□□□ 0.47
PHRF1-203ENST00000416188 ADGRL3Q9HAR2 1447 aa17.97■□□□□ 0.47
PHRF1-203ENST00000416188 CHL1O00533 1208 aa17.96■□□□□ 0.47
PHRF1-203ENST00000416188 BAG4O95429 457 aaKnown RBP17.96■□□□□ 0.47
PHRF1-203ENST00000416188 EIF4A1P60842 406 aaKnown RBP17.96■□□□□ 0.47
PHRF1-203ENST00000416188 IQCEQ6IPM2 695 aa17.96■□□□□ 0.47
PHRF1-203ENST00000416188 CNNM3Q8NE01 707 aa17.96■□□□□ 0.47
PHRF1-203ENST00000416188 SAMM50Q9Y512 469 aa17.96■□□□□ 0.47
PHRF1-203ENST00000416188 WTAPQ15007 396 aa17.96■□□□□ 0.47
PHRF1-203ENST00000416188 SEPT7Q16181 437 aaKnown RBP17.96■□□□□ 0.47
PHRF1-203ENST00000416188 TOP1P11387 765 aaKnown RBP17.96■□□□□ 0.47
PHRF1-203ENST00000416188 PRDM15P57071 1507 aaPredicted RBP17.96■□□□□ 0.47
PHRF1-203ENST00000416188 BIN1O00499 593 aa17.96■□□□□ 0.47
PHRF1-203ENST00000416188 RPS8P62241 208 aaKnown RBP17.96■□□□□ 0.47
PHRF1-203ENST00000416188 PCDHB15Q9Y5E8 787 aa17.96■□□□□ 0.47
PHRF1-203ENST00000416188 ANKRD62A6NC57 917 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 CCDC102AQ96A19 550 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 TBC1D32Q96NH3 1257 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 UBA5Q9GZZ9 404 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 PLXNC1O60486 1568 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 PRR36Q9H6K5 1346 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 SPDYE4A6NLX3 237 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 PPP1R12BO60237 982 aaPredicted RBP17.95■□□□□ 0.46
PHRF1-203ENST00000416188 TAF5LO75529 589 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 CLIP2Q9UDT6 1046 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 CLASP1Q7Z460 1538 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 SSR1P43307 286 aaKnown RBP17.95■□□□□ 0.46
PHRF1-203ENST00000416188 IFIT1BQ5T764 474 aaKnown RBP17.95■□□□□ 0.46
PHRF1-203ENST00000416188 PANK2Q9BZ23 570 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 GNAT2P19087 354 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 IARSP41252 1262 aaKnown RBP17.95■□□□□ 0.46
PHRF1-203ENST00000416188 TCIRG1Q13488 830 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 NEK1Q96PY6 1258 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 JCADQ9P266 1359 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 HOOK2Q96ED9 719 aa17.95■□□□□ 0.46
PHRF1-203ENST00000416188 ORC3Q9UBD5 711 aaPredicted RBP17.95■□□□□ 0.46
PHRF1-203ENST00000416188 ERBB3P21860 1342 aa17.94■□□□□ 0.46
PHRF1-203ENST00000416188 CNNM2Q9H8M5 875 aa17.94■□□□□ 0.46
PHRF1-203ENST00000416188 FAM135BQ49AJ0 1406 aa17.94■□□□□ 0.46
PHRF1-203ENST00000416188 B4DLN1 442 aa17.94■□□□□ 0.46
PHRF1-203ENST00000416188 MRPL12P52815 198 aaKnown RBP17.94■□□□□ 0.46
PHRF1-203ENST00000416188 CPLX3Q8WVH0 158 aa17.94■□□□□ 0.46
PHRF1-203ENST00000416188 ZNF594Q96JF6 807 aaPredicted RBP17.94■□□□□ 0.46
PHRF1-203ENST00000416188 USP6P35125 1406 aa17.94■□□□□ 0.46
PHRF1-203ENST00000416188 CTAGE5O15320 804 aa17.94■□□□□ 0.46
PHRF1-203ENST00000416188 SPA17Q15506 151 aa17.94■□□□□ 0.46
PHRF1-203ENST00000416188 FKBP15Q5T1M5 1219 aa17.94■□□□□ 0.46
PHRF1-203ENST00000416188 DDX19AQ9NUU7 478 aaKnown RBP17.94■□□□□ 0.46
PHRF1-203ENST00000416188 MCMDC2Q4G0Z9 681 aa17.94■□□□□ 0.46
PHRF1-203ENST00000416188 NPC1L1Q9UHC9 1359 aa17.93■□□□□ 0.46
PHRF1-203ENST00000416188 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.93■□□□□ 0.46
PHRF1-203ENST00000416188 SDSP20132 328 aa17.93■□□□□ 0.46
PHRF1-203ENST00000416188 MCM5P33992 734 aa17.93■□□□□ 0.46
PHRF1-203ENST00000416188 METAP2P50579 478 aaKnown RBP eCLIP17.93■□□□□ 0.461e-7■□□□□ 11.3
PHRF1-203ENST00000416188 DLGAP5Q15398 846 aa17.93■□□□□ 0.46
PHRF1-203ENST00000416188 CACNA2D4Q7Z3S7 1137 aa17.93■□□□□ 0.46
PHRF1-203ENST00000416188 WDR66Q8TBY9 1149 aa17.93■□□□□ 0.46
PHRF1-203ENST00000416188 ZSCAN12O43309 604 aa17.93■□□□□ 0.46
PHRF1-203ENST00000416188 ENOX2Q16206 610 aaKnown RBP17.93■□□□□ 0.46
PHRF1-203ENST00000416188 ADCY10Q96PN6 1610 aa17.93■□□□□ 0.46
PHRF1-203ENST00000416188 KCNQ3O43525 872 aa17.93■□□□□ 0.46
PHRF1-203ENST00000416188 URI1O94763 535 aaPredicted RBP17.93■□□□□ 0.46
PHRF1-203ENST00000416188 TRIM21P19474 475 aaKnown RBP17.93■□□□□ 0.46
PHRF1-203ENST00000416188 NUCB1Q02818 461 aa17.93■□□□□ 0.46
PHRF1-203ENST00000416188 CCDC148Q8NFR7 591 aa17.93■□□□□ 0.46
PHRF1-203ENST00000416188 IL17REQ8NFR9 667 aa17.93■□□□□ 0.46
PHRF1-203ENST00000416188 ARAP3Q8WWN8 1544 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 LIG1P18858 919 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 TAF3Q5VWG9 929 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 PDCL2Q8N4E4 241 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 ARHGAP31Q2M1Z3 1444 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 HDAC1Q13547 482 aaPredicted RBP17.92■□□□□ 0.46
PHRF1-203ENST00000416188 TMOD4Q9NZQ9 345 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 HMG20BQ9P0W2 317 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 ANKARQ7Z5J8 1434 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 KIF2AO00139 706 aaPredicted RBP17.92■□□□□ 0.46
PHRF1-203ENST00000416188 KIAA0754O94854 1291 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 TIMM10P62072 90 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 RAB3GAP1Q15042 981 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 SH2D4AQ9H788 454 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 A0A1B0GUL7 405 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 KIF4BQ2VIQ3 1234 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 KIF18AQ8NI77 898 aa17.92■□□□□ 0.46
PHRF1-203ENST00000416188 RNF113AO15541 343 aaKnown RBP17.91■□□□□ 0.46
PHRF1-203ENST00000416188 TCEANC2Q96MN5 208 aa17.91■□□□□ 0.46
PHRF1-203ENST00000416188 TRMT1Q9NXH9 659 aaKnown RBP17.91■□□□□ 0.46
PHRF1-203ENST00000416188 SAP30BPQ9UHR5 308 aaKnown RBP17.91■□□□□ 0.46
PHRF1-203ENST00000416188 USP19O94966 1318 aa17.91■□□□□ 0.46
PHRF1-203ENST00000416188 GIGYF1O75420 1035 aaPredicted RBP17.91■□□□□ 0.46
PHRF1-203ENST00000416188 TSG101Q99816 390 aa17.91■□□□□ 0.46
PHRF1-203ENST00000416188 BRF1Q92994 677 aa17.91■□□□□ 0.46
PHRF1-203ENST00000416188 RBM27Q9P2N5 1060 aaKnown RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 133.5 ms