RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 ERMNQ8TAM6 284 aa13.81□□□□□ -0.2
PTPRF-205ENST00000414879 JDP2Q8WYK2 163 aa13.81□□□□□ -0.2
PTPRF-205ENST00000414879 THRAP3Q9Y2W1 955 aaKnown RBP13.81□□□□□ -0.2
PTPRF-205ENST00000414879 FPGT-TNNI3KV9GXZ4 949 aa13.81□□□□□ -0.2
PTPRF-205ENST00000414879 IQGAP1P46940 1657 aa13.81□□□□□ -0.2
PTPRF-205ENST00000414879 WDR17Q8IZU2 1322 aa13.81□□□□□ -0.2
PTPRF-205ENST00000414879 PDCL3Q9H2J4 239 aa13.81□□□□□ -0.2
PTPRF-205ENST00000414879 RBM28Q9NW13 759 aaKnown RBP13.81□□□□□ -0.2
PTPRF-205ENST00000414879 RMND1Q9NWS8 449 aa13.81□□□□□ -0.2
PTPRF-205ENST00000414879 TNPO1Q92973 898 aaKnown RBP13.81□□□□□ -0.2
PTPRF-205ENST00000414879 PA2G4Q9UQ80 394 aaKnown RBP13.81□□□□□ -0.2
PTPRF-205ENST00000414879 ITGA6P23229 1130 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 TNNI2P48788 182 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 PRIM1P49642 420 aaKnown RBP13.8□□□□□ -0.2
PTPRF-205ENST00000414879 MICU3Q86XE3 530 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 HOOK2Q96ED9 719 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 SH2D4AQ9H788 454 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 NRXN1Q9ULB1 1477 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 FAM114A1Q8IWE2 563 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 CNNM3Q8NE01 707 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 PLEKHF1Q96S99 279 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 G2E3Q7L622 706 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 CNKSR2Q8WXI2 1034 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 PDE6BP35913 854 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 CCT2P78371 535 aaKnown RBP13.8□□□□□ -0.2
PTPRF-205ENST00000414879 KLHL40Q2TBA0 621 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 TMEM87BQ96K49 555 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 CDC42BPGQ6DT37 1551 aa13.8□□□□□ -0.2
PTPRF-205ENST00000414879 CCDC102BQ68D86 513 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 TBC1D22AQ8WUA7 517 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 JARID2Q92833 1246 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-205ENST00000414879 NSFL1CQ9UNZ2 370 aaKnown RBP13.79□□□□□ -0.2
PTPRF-205ENST00000414879 UBA7P41226 1012 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 SLC26A6Q9BXS9 759 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 GLT8D2Q9H1C3 349 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 MED14O60244 1454 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 ERLIN2O94905 339 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 APPBP2Q92624 585 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 A0A1B0GUL7 405 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 HIBADHP31937 336 aaKnown RBP13.79□□□□□ -0.2
PTPRF-205ENST00000414879 EIF5P55010 431 aaKnown RBP13.79□□□□□ -0.2
PTPRF-205ENST00000414879 HAND2P61296 217 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 STX1AQ16623 288 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 FSIP1Q8NA03 581 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 IL17REQ8NFR9 667 aa13.79□□□□□ -0.2
PTPRF-205ENST00000414879 PRC1O43663 620 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 NF2P35240 595 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 CREB3L3Q68CJ9 461 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 BRAPQ7Z569 592 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 VPS36Q86VN1 386 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 DNAJC10Q8IXB1 793 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 TRMT2AQ8IZ69 625 aaKnown RBP13.78□□□□□ -0.2
PTPRF-205ENST00000414879 TRPC5Q9UL62 973 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-205ENST00000414879 ALDH1B1P30837 517 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 STX8Q9UNK0 236 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 CETN1Q12798 172 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 TICAM2Q86XR7 235 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 ZSCAN12O43309 604 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 C6orf50Q9HD87 102 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 GGA1Q9UJY5 639 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 ALKQ9UM73 1620 aa13.78□□□□□ -0.2
PTPRF-205ENST00000414879 C8orf34Q49A92 452 aa13.77□□□□□ -0.2
PTPRF-205ENST00000414879 SSH3Q8TE77 659 aa13.77□□□□□ -0.2
PTPRF-205ENST00000414879 ALG1Q9BT22 464 aa13.77□□□□□ -0.2
PTPRF-205ENST00000414879 NEURL1BA8MQ27 555 aa13.77□□□□□ -0.21
PTPRF-205ENST00000414879 GSDMDP57764 484 aa13.77□□□□□ -0.21
PTPRF-205ENST00000414879 NOM1Q5C9Z4 860 aaKnown RBP13.77□□□□□ -0.21
PTPRF-205ENST00000414879 ZFYVE27Q5T4F4 411 aa13.77□□□□□ -0.21
PTPRF-205ENST00000414879 LLPHQ9BRT6 129 aaKnown RBP13.77□□□□□ -0.21
PTPRF-205ENST00000414879 SSH2Q76I76 1423 aa13.77□□□□□ -0.21
PTPRF-205ENST00000414879 PCCAP05165 728 aaPredicted RBP13.77□□□□□ -0.21
PTPRF-205ENST00000414879 CFAP100Q494V2 611 aa13.77□□□□□ -0.21
PTPRF-205ENST00000414879 Q6ZUG5 572 aa13.77□□□□□ -0.21
PTPRF-205ENST00000414879 RUFY3Q7L099 469 aa13.77□□□□□ -0.21
PTPRF-205ENST00000414879 KBTBD3Q8NAB2 608 aa13.77□□□□□ -0.21
PTPRF-205ENST00000414879 FAM89AQ96GI7 184 aa13.77□□□□□ -0.21
PTPRF-205ENST00000414879 PREX1Q8TCU6 1659 aa13.77□□□□□ -0.21
PTPRF-205ENST00000414879 GNA11P29992 359 aa13.76□□□□□ -0.21
PTPRF-205ENST00000414879 TTLL12Q14166 644 aaPredicted RBP13.76□□□□□ -0.21
PTPRF-205ENST00000414879 TSHZ3Q63HK5 1081 aa13.76□□□□□ -0.21
PTPRF-205ENST00000414879 TMC4Q7Z404 712 aa13.76□□□□□ -0.21
PTPRF-205ENST00000414879 FAM98CQ17RN3 349 aaKnown RBP13.76□□□□□ -0.21
PTPRF-205ENST00000414879 PIBF1Q8WXW3 757 aa13.76□□□□□ -0.21
PTPRF-205ENST00000414879 ERBB3P21860 1342 aa13.76□□□□□ -0.21
PTPRF-205ENST00000414879 PPLO60437 1756 aa13.76□□□□□ -0.21
PTPRF-205ENST00000414879 SFPQP23246 707 aaKnown RBP eCLIP13.76□□□□□ -0.21
PTPRF-205ENST00000414879 MAGEB6Q8N7X4 407 aa13.76□□□□□ -0.21
PTPRF-205ENST00000414879 ATP5JP18859 108 aa13.76□□□□□ -0.21
PTPRF-205ENST00000414879 USP26Q9BXU7 913 aa13.76□□□□□ -0.21
PTPRF-205ENST00000414879 DNAJC5Q9H3Z4 198 aa13.76□□□□□ -0.21
PTPRF-205ENST00000414879 DLC1Q96QB1 1528 aa13.76□□□□□ -0.21
PTPRF-205ENST00000414879 SYCE3A1L190 88 aa13.75□□□□□ -0.21
PTPRF-205ENST00000414879 A1BGP04217 495 aa13.75□□□□□ -0.21
PTPRF-205ENST00000414879 IL6STP40189 918 aaPredicted RBP13.75□□□□□ -0.21
PTPRF-205ENST00000414879 CETN2P41208 172 aa13.75□□□□□ -0.21
PTPRF-205ENST00000414879 PDE4CQ08493 712 aa13.75□□□□□ -0.21
PTPRF-205ENST00000414879 GPR108Q9NPR9 543 aa13.75□□□□□ -0.21
PTPRF-205ENST00000414879 TULP4Q9NRJ4 1543 aa13.75□□□□□ -0.21
PTPRF-205ENST00000414879 BAG6P46379 1132 aa13.75□□□□□ -0.21
PTPRF-205ENST00000414879 VSIG10Q8N0Z9 540 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms