RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 TTC36A6NLP5 189 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 ZBTB24O43167 697 aaPredicted RBP9.56□□□□□ -0.88
SCN9A-203ENST00000409672 ZGPATQ8N5A5 531 aaKnown RBP9.56□□□□□ -0.88
SCN9A-203ENST00000409672 ALG1Q9BT22 464 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 IRAK4Q9NWZ3 460 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 SHTN1A0MZ66 631 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 BIRC3Q13489 604 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 SSH1Q8WYL5 1049 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 DHX58Q96C10 678 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 RRP36Q96EU6 259 aaKnown RBP9.56□□□□□ -0.88
SCN9A-203ENST00000409672 CCNL1Q9UK58 526 aaPredicted RBP9.56□□□□□ -0.88
SCN9A-203ENST00000409672 HCLS1P14317 486 aaPredicted RBP9.56□□□□□ -0.88
SCN9A-203ENST00000409672 CTR9Q6PD62 1173 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 NEK1Q96PY6 1258 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 SATB1Q01826 763 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 RAD51AP2Q09MP3 1159 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 CCDC66A2RUB6 948 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 WASLO00401 505 aaPredicted RBP9.56□□□□□ -0.88
SCN9A-203ENST00000409672 TSTA3Q13630 321 aaPredicted RBP9.56□□□□□ -0.88
SCN9A-203ENST00000409672 SPATA17Q96L03 361 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 SPAG5Q96R06 1193 aa9.56□□□□□ -0.88
SCN9A-203ENST00000409672 RAPGEF1Q13905 1077 aa9.55□□□□□ -0.88
SCN9A-203ENST00000409672 BRD4O60885 1362 aaPredicted RBP9.55□□□□□ -0.88
SCN9A-203ENST00000409672 ARHGEF11O15085 1522 aa9.55□□□□□ -0.88
SCN9A-203ENST00000409672 ZBTB43O43298 467 aa9.55□□□□□ -0.88
SCN9A-203ENST00000409672 CAPZA3Q96KX2 299 aa9.55□□□□□ -0.88
SCN9A-203ENST00000409672 FAM169AQ9Y6X4 670 aa9.55□□□□□ -0.88
SCN9A-203ENST00000409672 TEX13AQ9BXU3 409 aaPredicted RBP9.55□□□□□ -0.88
SCN9A-203ENST00000409672 SF3A3Q12874 501 aaKnown RBP eCLIP9.55□□□□□ -0.88
SCN9A-203ENST00000409672 CUL4BQ13620 913 aa9.55□□□□□ -0.88
SCN9A-203ENST00000409672 CCT6BQ92526 530 aa9.55□□□□□ -0.88
SCN9A-203ENST00000409672 SREK1Q8WXA9 508 aaKnown RBP9.55□□□□□ -0.88
SCN9A-203ENST00000409672 EVI5LQ96CN4 794 aa9.55□□□□□ -0.88
SCN9A-203ENST00000409672 ABT1Q9ULW3 272 aaKnown RBP9.55□□□□□ -0.88
SCN9A-203ENST00000409672 SESTD1Q86VW0 696 aa9.55□□□□□ -0.88
SCN9A-203ENST00000409672 N4BP3O15049 544 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 IRS4O14654 1257 aaPredicted RBP9.54□□□□□ -0.88
SCN9A-203ENST00000409672 GAS8O95995 478 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 HMGB1P09429 215 aaKnown RBP9.54□□□□□ -0.88
SCN9A-203ENST00000409672 STX17P56962 302 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 CCDC184Q52MB2 194 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 RNASE9P60153 205 aaKnown RBP9.54□□□□□ -0.88
SCN9A-203ENST00000409672 B4DLN1 442 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 E7EVH7 732 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 MRPL12P52815 198 aaKnown RBP9.54□□□□□ -0.88
SCN9A-203ENST00000409672 LMBR1LQ6UX01 489 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 EPSTI1Q96J88 318 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 TBC1D7Q9P0N9 293 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 ATAD2Q6PL18 1390 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 CNBD1Q8NA66 436 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 USP21Q9UK80 565 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 TSPOAP1O95153 1857 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 GOLGA6CA6NDK9 693 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 GOLGA6BA6NDN3 693 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 GOLGA6DP0CG33 693 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 GOLGA6AQ9NYA3 693 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 FNBP1Q96RU3 617 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 SELENOSQ9BQE4 189 aa9.54□□□□□ -0.88
SCN9A-203ENST00000409672 MCM5P33992 734 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 SUPT6HQ7KZ85 1726 aaKnown RBP9.53□□□□□ -0.88
SCN9A-203ENST00000409672 CDCA7Q9BWT1 371 aaPredicted RBP9.53□□□□□ -0.88
SCN9A-203ENST00000409672 M0QZ92 97 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 CCNT1O60563 726 aaKnown RBP9.53□□□□□ -0.88
SCN9A-203ENST00000409672 KSR1Q8IVT5 923 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 JAKMIP2Q96AA8 810 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 ZRANB1Q9UGI0 708 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 ZBTB16Q05516 673 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 Q6ZUG5 572 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 ESR2Q92731 530 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 SKIV2LQ15477 1246 aaKnown RBP9.53□□□□□ -0.88
SCN9A-203ENST00000409672 PPME1Q9Y570 386 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 MAP9Q49MG5 647 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 IPO4Q8TEX9 1081 aaKnown RBP9.53□□□□□ -0.88
SCN9A-203ENST00000409672 AATFQ9NY61 560 aaKnown RBP eCLIP9.53□□□□□ -0.88
SCN9A-203ENST00000409672 CDK13Q14004 1512 aaKnown RBP9.53□□□□□ -0.88
SCN9A-203ENST00000409672 RIOK3O14730 519 aaKnown RBP9.53□□□□□ -0.88
SCN9A-203ENST00000409672 C20orf194Q5TEA3 1177 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 MED10Q9BTT4 135 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 AFG3L2Q9Y4W6 797 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 HGSO14964 777 aaPredicted RBP9.53□□□□□ -0.88
SCN9A-203ENST00000409672 TAF5LO75529 589 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 GNL1P36915 607 aaPredicted RBP9.53□□□□□ -0.88
SCN9A-203ENST00000409672 FAM160A1Q05DH4 1040 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 PPFIA1Q13136 1202 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 PDE3AQ14432 1141 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 FAM114A1Q8IWE2 563 aa9.53□□□□□ -0.88
SCN9A-203ENST00000409672 CALML3P27482 149 aa9.52□□□□□ -0.88
SCN9A-203ENST00000409672 IGBP1P78318 339 aa9.52□□□□□ -0.88
SCN9A-203ENST00000409672 CCDC6Q16204 474 aa9.52□□□□□ -0.88
SCN9A-203ENST00000409672 FAM182BQ5T319 152 aa9.52□□□□□ -0.88
SCN9A-203ENST00000409672 USP25Q9UHP3 1055 aa9.52□□□□□ -0.88
SCN9A-203ENST00000409672 FNDC3AQ9Y2H6 1198 aaKnown RBP9.52□□□□□ -0.88
SCN9A-203ENST00000409672 GRIN2BQ13224 1484 aa9.52□□□□□ -0.88
SCN9A-203ENST00000409672 ZSCAN12O43309 604 aa9.52□□□□□ -0.88
SCN9A-203ENST00000409672 AKR1B10O60218 316 aa9.52□□□□□ -0.88
SCN9A-203ENST00000409672 TEX11Q8IYF3 940 aa9.52□□□□□ -0.88
SCN9A-203ENST00000409672 FAM135AQ9P2D6 1515 aa9.52□□□□□ -0.89
SCN9A-203ENST00000409672 SYKP43405 635 aa9.52□□□□□ -0.89
SCN9A-203ENST00000409672 FOXD4Q12950 439 aaPredicted RBP9.52□□□□□ -0.89
SCN9A-203ENST00000409672 DIXDC1Q155Q3 683 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 155.2 ms