RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 MARF1Q9Y4F3 1742 aaKnown RBP15.76■□□□□ 0.11
VPS54-203ENST00000409558 NFXL1Q6ZNB6 911 aa15.75■□□□□ 0.11
VPS54-203ENST00000409558 STARD3NLO95772 234 aa15.75■□□□□ 0.11
VPS54-203ENST00000409558 TCIRG1Q13488 830 aa15.75■□□□□ 0.11
VPS54-203ENST00000409558 RABL6Q3YEC7 729 aaPredicted RBP15.75■□□□□ 0.11
VPS54-203ENST00000409558 CMTR1Q8N1G2 835 aaKnown RBP15.75■□□□□ 0.11
VPS54-203ENST00000409558 CCDC191Q8NCU4 936 aa15.75■□□□□ 0.11
VPS54-203ENST00000409558 HMG20BQ9P0W2 317 aa15.75■□□□□ 0.11
VPS54-203ENST00000409558 IRS4O14654 1257 aaPredicted RBP15.75■□□□□ 0.11
VPS54-203ENST00000409558 FGAP02671 866 aa15.75■□□□□ 0.11
VPS54-203ENST00000409558 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.75■□□□□ 0.11
VPS54-203ENST00000409558 PIBF1Q8WXW3 757 aa15.75■□□□□ 0.11
VPS54-203ENST00000409558 ZNF592Q92610 1267 aa15.75■□□□□ 0.11
VPS54-203ENST00000409558 CHD2O14647 1828 aaKnown RBP15.75■□□□□ 0.11
VPS54-203ENST00000409558 LRMPQ12912 555 aa15.75■□□□□ 0.11
VPS54-203ENST00000409558 MIGA1Q8NAN2 632 aa15.75■□□□□ 0.11
VPS54-203ENST00000409558 PDLIM2Q96JY6 352 aa15.75■□□□□ 0.11
VPS54-203ENST00000409558 USP28Q96RU2 1077 aa15.75■□□□□ 0.11
VPS54-203ENST00000409558 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.75■□□□□ 0.118e-8■■■□□ 15.1
VPS54-203ENST00000409558 MED23Q9ULK4 1368 aa15.74■□□□□ 0.11
VPS54-203ENST00000409558 A0A1B0GVL5 298 aa15.74■□□□□ 0.11
VPS54-203ENST00000409558 PTGS1P23219 599 aa15.74■□□□□ 0.11
VPS54-203ENST00000409558 MARCKSP29966 332 aaPredicted RBP15.74■□□□□ 0.11
VPS54-203ENST00000409558 PIP4K2BP78356 416 aa15.74■□□□□ 0.11
VPS54-203ENST00000409558 HSP90AA4PQ58FG1 418 aa15.74■□□□□ 0.11
VPS54-203ENST00000409558 SDF4Q9BRK5 362 aa15.74■□□□□ 0.11
VPS54-203ENST00000409558 ABCF2Q9UG63 623 aa15.74■□□□□ 0.11
VPS54-203ENST00000409558 UBE2Q2LH0YL09 131 aa15.74■□□□□ 0.11
VPS54-203ENST00000409558 PTPN21Q16825 1174 aa15.74■□□□□ 0.11
VPS54-203ENST00000409558 FILIP1Q7Z7B0 1213 aa15.74■□□□□ 0.11
VPS54-203ENST00000409558 CCAR1Q8IX12 1150 aaKnown RBP15.74■□□□□ 0.11
VPS54-203ENST00000409558 LRRC37A3O60309 1634 aa15.74■□□□□ 0.11
VPS54-203ENST00000409558 SEC31BQ9NQW1 1179 aa15.74■□□□□ 0.11
VPS54-203ENST00000409558 PRC1O43663 620 aa15.73■□□□□ 0.11
VPS54-203ENST00000409558 PHKA1P46020 1223 aa15.73■□□□□ 0.11
VPS54-203ENST00000409558 FAM182BQ5T319 152 aa15.73■□□□□ 0.11
VPS54-203ENST00000409558 PHKBQ93100 1093 aa15.73■□□□□ 0.11
VPS54-203ENST00000409558 MTMR7Q9Y216 660 aa15.73■□□□□ 0.11
VPS54-203ENST00000409558 SRCAPQ6ZRS2 3230 aa15.73■□□□□ 0.11
VPS54-203ENST00000409558 GPAA1O43292 621 aa15.73■□□□□ 0.11
VPS54-203ENST00000409558 MED1Q15648 1581 aaPredicted RBP15.73■□□□□ 0.11
VPS54-203ENST00000409558 WTIPA6NIX2 430 aaPredicted RBP15.73■□□□□ 0.11
VPS54-203ENST00000409558 OFD1O75665 1012 aa15.73■□□□□ 0.11
VPS54-203ENST00000409558 TNS3Q68CZ2 1445 aa15.73■□□□□ 0.11
VPS54-203ENST00000409558 ZNF213O14771 459 aa15.72■□□□□ 0.11
VPS54-203ENST00000409558 ZNF165P49910 485 aa15.72■□□□□ 0.11
VPS54-203ENST00000409558 IMMTQ16891 758 aaKnown RBP15.72■□□□□ 0.11
VPS54-203ENST00000409558 ATG3Q9NT62 314 aa15.72■□□□□ 0.11
VPS54-203ENST00000409558 BECN2A8MW95 431 aa15.72■□□□□ 0.11
VPS54-203ENST00000409558 B4E1Z4 1266 aa15.72■□□□□ 0.11
VPS54-203ENST00000409558 NKX2-3Q8TAU0 364 aa15.72■□□□□ 0.11
VPS54-203ENST00000409558 SCAND2PQ9GZW5 306 aaPredicted RBP15.72■□□□□ 0.11
VPS54-203ENST00000409558 ADD1P35611 737 aaKnown RBP15.72■□□□□ 0.11
VPS54-203ENST00000409558 ZRSR1Q15695 479 aaKnown RBP15.72■□□□□ 0.11
VPS54-203ENST00000409558 DZIP3Q86Y13 1208 aaKnown RBP15.72■□□□□ 0.11
VPS54-203ENST00000409558 NSUN7Q8NE18 718 aaKnown RBP15.72■□□□□ 0.11
VPS54-203ENST00000409558 CCDC186Q7Z3E2 898 aa15.72■□□□□ 0.11
VPS54-203ENST00000409558 FSIP1Q8NA03 581 aa15.72■□□□□ 0.11
VPS54-203ENST00000409558 SENP2Q9HC62 589 aa15.72■□□□□ 0.11
VPS54-203ENST00000409558 ORC3Q9UBD5 711 aaPredicted RBP15.72■□□□□ 0.11
VPS54-203ENST00000409558 PYCARDQ9ULZ3 195 aa15.72■□□□□ 0.11
VPS54-203ENST00000409558 CTDNEP1O95476 244 aa15.71■□□□□ 0.11
VPS54-203ENST00000409558 TRDNQ13061 729 aa15.71■□□□□ 0.11
VPS54-203ENST00000409558 ZMYM1Q5SVZ6 1142 aa15.71■□□□□ 0.11
VPS54-203ENST00000409558 CBX8Q9HC52 389 aa15.71■□□□□ 0.11
VPS54-203ENST00000409558 GTF2E1P29083 439 aaPredicted RBP15.71■□□□□ 0.11
VPS54-203ENST00000409558 MCAMP43121 646 aa15.71■□□□□ 0.11
VPS54-203ENST00000409558 CCDC73Q6ZRK6 1079 aa15.71■□□□□ 0.11
VPS54-203ENST00000409558 MPHOSPH8Q99549 860 aa15.71■□□□□ 0.11
VPS54-203ENST00000409558 NPHP1O15259 732 aa15.71■□□□□ 0.1
VPS54-203ENST00000409558 PDIA3P30101 505 aaKnown RBP15.71■□□□□ 0.1
VPS54-203ENST00000409558 CTDSPL2Q05D32 466 aa15.71■□□□□ 0.1
VPS54-203ENST00000409558 STK38Q15208 465 aa15.71■□□□□ 0.1
VPS54-203ENST00000409558 ANKRD18BA2A2Z9 1011 aa15.7■□□□□ 0.1
VPS54-203ENST00000409558 ERVV-2B6SEH9 535 aa15.7■□□□□ 0.1
VPS54-203ENST00000409558 GOLGA6L19H0YKK7 550 aa15.7■□□□□ 0.1
VPS54-203ENST00000409558 EXOC5O00471 708 aa15.7■□□□□ 0.1
VPS54-203ENST00000409558 SPECC1Q5M775 1068 aa15.7■□□□□ 0.1
VPS54-203ENST00000409558 MRVI1Q9Y6F6 885 aa15.7■□□□□ 0.1
VPS54-203ENST00000409558 hCG_1642624A0A1W2PR95 340 aa15.7■□□□□ 0.1
VPS54-203ENST00000409558 WWC3Q9ULE0 1092 aa15.7■□□□□ 0.1
VPS54-203ENST00000409558 C8orf76Q96K31 380 aa15.7■□□□□ 0.1
VPS54-203ENST00000409558 NUP133Q8WUM0 1156 aa15.7■□□□□ 0.1
VPS54-203ENST00000409558 KINO60870 393 aaKnown RBP15.69■□□□□ 0.1
VPS54-203ENST00000409558 ARID5BQ14865 1188 aa15.69■□□□□ 0.1
VPS54-203ENST00000409558 SLC4A9Q96Q91 983 aa15.69■□□□□ 0.1
VPS54-203ENST00000409558 MINDY4BA8MYZ0 360 aa15.69■□□□□ 0.1
VPS54-203ENST00000409558 NOLC1Q14978 699 aaKnown RBP eCLIP15.69■□□□□ 0.1
VPS54-203ENST00000409558 VSIG10Q8N0Z9 540 aa15.69■□□□□ 0.1
VPS54-203ENST00000409558 AIDAQ96BJ3 306 aa15.69■□□□□ 0.1
VPS54-203ENST00000409558 C16orf45Q96MC5 204 aaPredicted RBP15.69■□□□□ 0.1
VPS54-203ENST00000409558 CARD10Q9BWT7 1032 aa15.69■□□□□ 0.1
VPS54-203ENST00000409558 CACNA1FO60840 1977 aa15.68■□□□□ 0.1
VPS54-203ENST00000409558 PRKAB2O43741 272 aa15.68■□□□□ 0.1
VPS54-203ENST00000409558 ARMT1Q9H993 441 aa15.68■□□□□ 0.1
VPS54-203ENST00000409558 PIH1D3Q9NQM4 214 aaKnown RBP15.68■□□□□ 0.1
VPS54-203ENST00000409558 EPB41L2O43491 1005 aaKnown RBP15.68■□□□□ 0.1
VPS54-203ENST00000409558 ATP6V1AP38606 617 aa15.68■□□□□ 0.1
VPS54-203ENST00000409558 RESTQ13127 1097 aa15.68■□□□□ 0.1
VPS54-203ENST00000409558 MAGEB6Q8N7X4 407 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 187.8 ms