RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 TTLL7Q6ZT98 887 aa21.49■■□□□ 1.03
USP48-204ENST00000400301 TMC6Q7Z403 805 aa21.49■■□□□ 1.03
USP48-204ENST00000400301 CEP131Q9UPN4 1083 aa21.49■■□□□ 1.03
USP48-204ENST00000400301 IRS4O14654 1257 aaPredicted RBP21.49■■□□□ 1.03
USP48-204ENST00000400301 PPFIBP1Q86W92 1011 aa21.49■■□□□ 1.03
USP48-204ENST00000400301 SASH1O94885 1247 aa21.48■■□□□ 1.03
USP48-204ENST00000400301 SPTLC2O15270 562 aa21.48■■□□□ 1.03
USP48-204ENST00000400301 AOPEPQ8N6M6 819 aa21.48■■□□□ 1.03
USP48-204ENST00000400301 ERBB3P21860 1342 aa21.48■■□□□ 1.03
USP48-204ENST00000400301 SYKP43405 635 aa21.48■■□□□ 1.03
USP48-204ENST00000400301 KIF18AQ8NI77 898 aa21.48■■□□□ 1.03
USP48-204ENST00000400301 XAGE2Q96GT9 111 aa21.48■■□□□ 1.03
USP48-204ENST00000400301 IQSEC3Q9UPP2 1182 aaPredicted RBP21.48■■□□□ 1.03
USP48-204ENST00000400301 SETD1BQ9UPS6 1966 aaKnown RBP21.48■■□□□ 1.03
USP48-204ENST00000400301 GOLGA6L1Q8N7Z2 621 aa21.48■■□□□ 1.03
USP48-204ENST00000400301 LLPHQ9BRT6 129 aaKnown RBP21.47■■□□□ 1.03
USP48-204ENST00000400301 ZDHHC9Q9Y397 364 aa21.47■■□□□ 1.03
USP48-204ENST00000400301 USP32Q8NFA0 1604 aa21.47■■□□□ 1.03
USP48-204ENST00000400301 GSDMDP57764 484 aa21.47■■□□□ 1.03
USP48-204ENST00000400301 TMEM131LA2VDJ0 1609 aa21.47■■□□□ 1.03
USP48-204ENST00000400301 TAF5LO75529 589 aa21.47■■□□□ 1.03
USP48-204ENST00000400301 LARGE1O95461 756 aa21.47■■□□□ 1.03
USP48-204ENST00000400301 KLHL10Q6JEL2 608 aa21.46■■□□□ 1.03
USP48-204ENST00000400301 TTC6Q86TZ1 520 aa21.46■■□□□ 1.03
USP48-204ENST00000400301 IQCA1Q86XH1 822 aa21.46■■□□□ 1.03
USP48-204ENST00000400301 GTF3C6Q969F1 213 aa21.46■■□□□ 1.03
USP48-204ENST00000400301 RXRAP19793 462 aa21.46■■□□□ 1.03
USP48-204ENST00000400301 ADAMTS13Q76LX8 1427 aa21.46■■□□□ 1.03
USP48-204ENST00000400301 LIG1P18858 919 aa21.46■■□□□ 1.03
USP48-204ENST00000400301 ZNF589Q86UQ0 364 aaPredicted RBP21.46■■□□□ 1.03
USP48-204ENST00000400301 C17orf53Q8N3J3 647 aaPredicted RBP21.46■■□□□ 1.03
USP48-204ENST00000400301 GPS2Q13227 327 aa21.46■■□□□ 1.03
USP48-204ENST00000400301 AGLP35573 1532 aa21.45■■□□□ 1.02
USP48-204ENST00000400301 KIF2AO00139 706 aaPredicted RBP21.45■■□□□ 1.02
USP48-204ENST00000400301 TOP1P11387 765 aaKnown RBP21.45■■□□□ 1.02
USP48-204ENST00000400301 CCDC102BQ68D86 513 aa21.45■■□□□ 1.02
USP48-204ENST00000400301 OTUD7BQ6GQQ9 843 aa21.45■■□□□ 1.02
USP48-204ENST00000400301 CLEC17AQ6ZS10 378 aa21.45■■□□□ 1.02
USP48-204ENST00000400301 DZIP3Q86Y13 1208 aaKnown RBP21.45■■□□□ 1.02
USP48-204ENST00000400301 CLSTN2Q9H4D0 955 aa21.45■■□□□ 1.02
USP48-204ENST00000400301 SMARCE1Q969G3 411 aa21.45■■□□□ 1.02
USP48-204ENST00000400301 A0A0U1RQG5 324 aaPredicted RBP21.45■■□□□ 1.02
USP48-204ENST00000400301 SKILP12757 684 aa21.45■■□□□ 1.02
USP48-204ENST00000400301 DNAJC10Q8IXB1 793 aa21.45■■□□□ 1.02
USP48-204ENST00000400301 HAUS7Q99871 368 aa21.45■■□□□ 1.02
USP48-204ENST00000400301 ADGRB2O60241 1585 aa21.44■■□□□ 1.02
USP48-204ENST00000400301 A0A1B0GVL5 298 aa21.44■■□□□ 1.02
USP48-204ENST00000400301 APPBP2Q92624 585 aa21.44■■□□□ 1.02
USP48-204ENST00000400301 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.44■■□□□ 1.021e-7■■■■□ 23.7
USP48-204ENST00000400301 WTAPQ15007 396 aa21.44■■□□□ 1.02
USP48-204ENST00000400301 MTX1Q13505 466 aa21.43■■□□□ 1.02
USP48-204ENST00000400301 CTCFLQ8NI51 663 aaPredicted RBP21.43■■□□□ 1.02
USP48-204ENST00000400301 CDC5LQ99459 802 aaKnown RBP21.43■■□□□ 1.02
USP48-204ENST00000400301 CBX8Q9HC52 389 aa21.43■■□□□ 1.02
USP48-204ENST00000400301 ITGA6P23229 1130 aa21.43■■□□□ 1.02
USP48-204ENST00000400301 AXIN2Q9Y2T1 843 aa21.43■■□□□ 1.02
USP48-204ENST00000400301 SLC4A4Q9Y6R1 1079 aa21.43■■□□□ 1.02
USP48-204ENST00000400301 E7EWF7 191 aa21.43■■□□□ 1.02
USP48-204ENST00000400301 CCDC152Q4G0S7 254 aa21.43■■□□□ 1.02
USP48-204ENST00000400301 GPAA1O43292 621 aa21.42■■□□□ 1.02
USP48-204ENST00000400301 FAM160A1Q05DH4 1040 aa21.42■■□□□ 1.02
USP48-204ENST00000400301 NECTIN1Q15223 517 aa21.42■■□□□ 1.02
USP48-204ENST00000400301 LRRC24Q50LG9 513 aa21.42■■□□□ 1.02
USP48-204ENST00000400301 ATL3Q6DD88 541 aa21.42■■□□□ 1.02
USP48-204ENST00000400301 DSCC1Q9BVC3 393 aa21.42■■□□□ 1.02
USP48-204ENST00000400301 CBX1P83916 185 aa21.42■■□□□ 1.02
USP48-204ENST00000400301 TEX35Q5T0J7 233 aa21.41■■□□□ 1.02
USP48-204ENST00000400301 CATIPQ7Z7H3 387 aa21.41■■□□□ 1.02
USP48-204ENST00000400301 IGKV5-2P06315 115 aa21.41■■□□□ 1.02
USP48-204ENST00000400301 CYP7A1P22680 504 aa21.41■■□□□ 1.02
USP48-204ENST00000400301 ZAP70P43403 619 aa21.41■■□□□ 1.02
USP48-204ENST00000400301 ACSBG1Q96GR2 724 aa21.41■■□□□ 1.02
USP48-204ENST00000400301 KRT23Q9C075 422 aa21.41■■□□□ 1.02
USP48-204ENST00000400301 TRIM34Q9BYJ4 488 aa21.41■■□□□ 1.02
USP48-204ENST00000400301 CYP2E1P05181 493 aaPredicted RBP21.41■■□□□ 1.02
USP48-204ENST00000400301 BRAPQ7Z569 592 aa21.41■■□□□ 1.02
USP48-204ENST00000400301 MAGEC2Q9UBF1 373 aaPredicted RBP21.41■■□□□ 1.02
USP48-204ENST00000400301 MAP2P11137 1827 aaKnown RBP21.4■■□□□ 1.02
USP48-204ENST00000400301 RTN1Q16799 776 aa21.4■■□□□ 1.02
USP48-204ENST00000400301 CEP135Q66GS9 1140 aa21.4■■□□□ 1.02
USP48-204ENST00000400301 TECPR2O15040 1411 aa21.4■■□□□ 1.02
USP48-204ENST00000400301 LMOD1P29536 600 aaPredicted RBP21.4■■□□□ 1.02
USP48-204ENST00000400301 PTPN12Q05209 780 aaKnown RBP21.4■■□□□ 1.02
USP48-204ENST00000400301 NAA16Q6N069 864 aaPredicted RBP21.4■■□□□ 1.02
USP48-204ENST00000400301 MAGEB6Q8N7X4 407 aa21.4■■□□□ 1.02
USP48-204ENST00000400301 CNNM2Q9H8M5 875 aa21.4■■□□□ 1.02
USP48-204ENST00000400301 ERVV-2B6SEH9 535 aa21.39■■□□□ 1.02
USP48-204ENST00000400301 CYP21A2P08686 494 aa21.39■■□□□ 1.02
USP48-204ENST00000400301 TCIRG1Q13488 830 aa21.39■■□□□ 1.02
USP48-204ENST00000400301 ZNF500O60304 480 aaPredicted RBP21.39■■□□□ 1.01
USP48-204ENST00000400301 EPHA10Q5JZY3 1008 aa21.39■■□□□ 1.01
USP48-204ENST00000400301 UBXN4Q92575 508 aa21.39■■□□□ 1.01
USP48-204ENST00000400301 B4E1Z4 1266 aa21.39■■□□□ 1.01
USP48-204ENST00000400301 CLSTN1O94985 981 aa21.39■■□□□ 1.01
USP48-204ENST00000400301 HSPD1P10809 573 aaKnown RBP21.39■■□□□ 1.01
USP48-204ENST00000400301 ATP6V1AP38606 617 aa21.39■■□□□ 1.01
USP48-204ENST00000400301 BTG4Q9NY30 223 aa21.39■■□□□ 1.01
USP48-204ENST00000400301 NIP7Q9Y221 180 aaKnown RBP eCLIP21.39■■□□□ 1.01
USP48-204ENST00000400301 DDIT3P35638 169 aa21.38■■□□□ 1.01
USP48-204ENST00000400301 CCDC70Q6NSX1 233 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms