RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 CEP128Q6ZU80 1094 aa15.81■□□□□ 0.12
COL4A3-202ENST00000396578 CDC5LQ99459 802 aaKnown RBP15.81■□□□□ 0.12
COL4A3-202ENST00000396578 TERF1P54274 439 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 ZNF569Q5MCW4 686 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 LDHCP07864 332 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 CABP5Q9NP86 173 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 TSPY3P0CV98 308 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 TSPY8P0CW00 308 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 FMNL3Q8IVF7 1028 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 VCX3BQ9H321 246 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 LZTFL1Q9NQ48 299 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 DACT1Q9NYF0 836 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 GJC1P36383 396 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 NUCB1Q02818 461 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 RAB11FIP4Q86YS3 637 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 LUC7L2Q9Y383 392 aaKnown RBP15.8■□□□□ 0.12
COL4A3-202ENST00000396578 ATP6V0A2Q9Y487 856 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 PIK3R4Q99570 1358 aa15.8■□□□□ 0.12
COL4A3-202ENST00000396578 LMOD1P29536 600 aaPredicted RBP15.79■□□□□ 0.12
COL4A3-202ENST00000396578 NECAB1Q8N987 351 aa15.79■□□□□ 0.12
COL4A3-202ENST00000396578 MTUS1Q9ULD2 1270 aa15.79■□□□□ 0.12
COL4A3-202ENST00000396578 XRCC6P12956 609 aaKnown RBP eCLIP15.79■□□□□ 0.12
COL4A3-202ENST00000396578 CEP85LQ5SZL2 805 aa15.79■□□□□ 0.12
COL4A3-202ENST00000396578 GSTO1P78417 241 aa15.79■□□□□ 0.12
COL4A3-202ENST00000396578 ERCC6LQ2NKX8 1250 aa15.79■□□□□ 0.12
COL4A3-202ENST00000396578 LMNTD2Q8IXW0 634 aa15.79■□□□□ 0.12
COL4A3-202ENST00000396578 NKIRAS1Q9NYS0 192 aa15.79■□□□□ 0.12
COL4A3-202ENST00000396578 HEATR3Q7Z4Q2 680 aa15.79■□□□□ 0.12
COL4A3-202ENST00000396578 MSANTD4Q8NCY6 345 aa15.79■□□□□ 0.12
COL4A3-202ENST00000396578 EPSTI1Q96J88 318 aa15.79■□□□□ 0.12
COL4A3-202ENST00000396578 MARCKSP29966 332 aaPredicted RBP15.79■□□□□ 0.12
COL4A3-202ENST00000396578 MAK16Q9BXY0 300 aaKnown RBP15.79■□□□□ 0.12
COL4A3-202ENST00000396578 STX8Q9UNK0 236 aa15.79■□□□□ 0.12
COL4A3-202ENST00000396578 GAS8O95995 478 aa15.78■□□□□ 0.12
COL4A3-202ENST00000396578 CCDC26Q8TAB7 109 aa15.78■□□□□ 0.12
COL4A3-202ENST00000396578 PCK1P35558 622 aa15.78■□□□□ 0.12
COL4A3-202ENST00000396578 AFAP1L1Q8TED9 768 aa15.78■□□□□ 0.12
COL4A3-202ENST00000396578 FEZ2Q9UHY8 353 aaPredicted RBP15.78■□□□□ 0.12
COL4A3-202ENST00000396578 NCAPD3P42695 1498 aa15.78■□□□□ 0.12
COL4A3-202ENST00000396578 TRAF1Q13077 416 aa15.78■□□□□ 0.12
COL4A3-202ENST00000396578 ZC3H6P61129 1189 aaKnown RBP15.78■□□□□ 0.12
COL4A3-202ENST00000396578 PPFIA3O75145 1194 aa15.78■□□□□ 0.12
COL4A3-202ENST00000396578 KARSQ15046 597 aaKnown RBP15.78■□□□□ 0.12
COL4A3-202ENST00000396578 SLC4A8Q2Y0W8 1093 aa15.78■□□□□ 0.12
COL4A3-202ENST00000396578 GPR161Q8N6U8 529 aaKnown RBP15.78■□□□□ 0.12
COL4A3-202ENST00000396578 CALCOCO2Q13137 446 aa15.78■□□□□ 0.12
COL4A3-202ENST00000396578 BUB1BO60566 1050 aaPredicted RBP15.77■□□□□ 0.12
COL4A3-202ENST00000396578 F13A1P00488 732 aa15.77■□□□□ 0.12
COL4A3-202ENST00000396578 VIMP08670 466 aaKnown RBP15.77■□□□□ 0.12
COL4A3-202ENST00000396578 PRIM1P49642 420 aaKnown RBP15.77■□□□□ 0.12
COL4A3-202ENST00000396578 FYB2Q5VWT5 728 aa15.77■□□□□ 0.12
COL4A3-202ENST00000396578 PPP1R42Q7Z4L9 355 aa15.77■□□□□ 0.12
COL4A3-202ENST00000396578 ESR2Q92731 530 aa15.77■□□□□ 0.12
COL4A3-202ENST00000396578 FAM169AQ9Y6X4 670 aa15.77■□□□□ 0.12
COL4A3-202ENST00000396578 SH3BP5O60239 455 aa15.77■□□□□ 0.12
COL4A3-202ENST00000396578 DNM1Q05193 864 aaKnown RBP15.77■□□□□ 0.12
COL4A3-202ENST00000396578 TSHZ3Q63HK5 1081 aa15.77■□□□□ 0.12
COL4A3-202ENST00000396578 LDHAL6AQ6ZMR3 332 aa15.77■□□□□ 0.12
COL4A3-202ENST00000396578 ANKRD24Q8TF21 1146 aa15.77■□□□□ 0.12
COL4A3-202ENST00000396578 FAM184BQ9ULE4 1060 aa15.77■□□□□ 0.12
COL4A3-202ENST00000396578 TLDC2A0PJX2 215 aa15.77■□□□□ 0.12
COL4A3-202ENST00000396578 VPS52Q8N1B4 723 aa15.77■□□□□ 0.12
COL4A3-202ENST00000396578 A6NNZ2 444 aa15.77■□□□□ 0.11
COL4A3-202ENST00000396578 TUBB8Q3ZCM7 444 aa15.77■□□□□ 0.11
COL4A3-202ENST00000396578 SEPT14Q6ZU15 432 aa15.77■□□□□ 0.11
COL4A3-202ENST00000396578 FAM13AO94988 1023 aa15.77■□□□□ 0.11
COL4A3-202ENST00000396578 GNAQP50148 359 aa15.77■□□□□ 0.11
COL4A3-202ENST00000396578 SARNPP82979 210 aaKnown RBP15.77■□□□□ 0.11
COL4A3-202ENST00000396578 Q6ZUG5 572 aa15.77■□□□□ 0.11
COL4A3-202ENST00000396578 CNGA4Q8IV77 575 aa15.77■□□□□ 0.11
COL4A3-202ENST00000396578 PPP1R9BQ96SB3 815 aa15.77■□□□□ 0.11
COL4A3-202ENST00000396578 NEDD9Q14511 834 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.76■□□□□ 0.11
COL4A3-202ENST00000396578 ARAP1Q96P48 1450 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 SYT10Q6XYQ8 523 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 SEL1L2Q5TEA6 688 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 MPRIPQ6WCQ1 1025 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 GTF3C6Q969F1 213 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 POTEDQ86YR6 584 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 BRF1Q92994 677 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 CASQ2O14958 399 aaPredicted RBP15.76■□□□□ 0.11
COL4A3-202ENST00000396578 SPTLC2O15270 562 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 ANKLE2Q86XL3 938 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 DHX58Q96C10 678 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 SDSP20132 328 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 PPP2R3AQ06190 1150 aa15.76■□□□□ 0.11
COL4A3-202ENST00000396578 GBP7Q8N8V2 638 aaPredicted RBP15.75■□□□□ 0.11
COL4A3-202ENST00000396578 IFNKQ9P0W0 207 aa15.75■□□□□ 0.11
COL4A3-202ENST00000396578 UQCRFS1P1P0C7P4 283 aa15.75■□□□□ 0.11
COL4A3-202ENST00000396578 UTP11Q9Y3A2 253 aaKnown RBP15.75■□□□□ 0.11
COL4A3-202ENST00000396578 KIF14Q15058 1648 aa15.75■□□□□ 0.11
COL4A3-202ENST00000396578 SETSIPP0DME0 302 aa15.75■□□□□ 0.11
COL4A3-202ENST00000396578 KRT2P35908 639 aa15.75■□□□□ 0.11
COL4A3-202ENST00000396578 CALML3P27482 149 aa15.75■□□□□ 0.11
COL4A3-202ENST00000396578 MCMDC2Q4G0Z9 681 aa15.75■□□□□ 0.11
COL4A3-202ENST00000396578 SMAP1Q8IYB5 467 aaPredicted RBP15.75■□□□□ 0.11
COL4A3-202ENST00000396578 SNX21Q969T3 373 aa15.75■□□□□ 0.11
COL4A3-202ENST00000396578 CSRNP2Q9H175 543 aa15.75■□□□□ 0.11
COL4A3-202ENST00000396578 TTC36A6NLP5 189 aa15.74■□□□□ 0.11
COL4A3-202ENST00000396578 HDAC1Q13547 482 aaPredicted RBP15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms