RNA–Protein interactions for RNA: ENST00000396547.5

TRIM39-203, Transcript of tripartite motif containing 39, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene TRIM39, Length 3,187 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-203ENST00000396547 MAP3K2Q9Y2U5 619 aa11.51□□□□□ -0.57
TRIM39-203ENST00000396547 A0A1B0GVL5 298 aa11.5□□□□□ -0.57
TRIM39-203ENST00000396547 ANKRD1Q15327 319 aa11.5□□□□□ -0.57
TRIM39-203ENST00000396547 NCOA5Q9HCD5 579 aaKnown RBP11.5□□□□□ -0.57
TRIM39-203ENST00000396547 IFNKQ9P0W0 207 aa11.5□□□□□ -0.57
TRIM39-203ENST00000396547 DNAI1Q9UI46 699 aa11.5□□□□□ -0.57
TRIM39-203ENST00000396547 CFAP45Q9UL16 551 aa11.5□□□□□ -0.57
TRIM39-203ENST00000396547 TTC41PQ6P2S7 1318 aa11.5□□□□□ -0.57
TRIM39-203ENST00000396547 RGPD1P0DJD0 1748 aa11.5□□□□□ -0.57
TRIM39-203ENST00000396547 CCZ1BP86790 482 aa11.5□□□□□ -0.57
TRIM39-203ENST00000396547 CCZ1P86791 482 aaPredicted RBP11.5□□□□□ -0.57
TRIM39-203ENST00000396547 GOLGA8FQ08AF8 430 aa11.5□□□□□ -0.57
TRIM39-203ENST00000396547 GOLGA8DPQ0D2H9 430 aa11.5□□□□□ -0.57
TRIM39-203ENST00000396547 GNL2Q13823 731 aaKnown RBP11.5□□□□□ -0.57
TRIM39-203ENST00000396547 SF3A1Q15459 793 aaKnown RBP11.5□□□□□ -0.57
TRIM39-203ENST00000396547 OTUD7BQ6GQQ9 843 aa11.5□□□□□ -0.57
TRIM39-203ENST00000396547 DHX37Q8IY37 1157 aaKnown RBP11.49□□□□□ -0.57
TRIM39-203ENST00000396547 NEK11Q8NG66 645 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 ZCCHC17Q9NP64 241 aaKnown RBP11.49□□□□□ -0.57
TRIM39-203ENST00000396547 LRRC37A3O60309 1634 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 SOCS7O14512 581 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 URI1O94763 535 aaPredicted RBP11.49□□□□□ -0.57
TRIM39-203ENST00000396547 SEC31AO94979 1220 aaKnown RBP11.49□□□□□ -0.57
TRIM39-203ENST00000396547 BMS1Q14692 1282 aaKnown RBP11.49□□□□□ -0.57
TRIM39-203ENST00000396547 SLFNL1Q499Z3 407 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 HSP90AA4PQ58FG1 418 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 RAB11FIP4Q86YS3 637 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 CEP57L1Q8IYX8 460 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 USP28Q96RU2 1077 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 HNRNPH2P55795 449 aaKnown RBP11.49□□□□□ -0.57
TRIM39-203ENST00000396547 RESTQ13127 1097 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 MPRIPQ6WCQ1 1025 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 NYAP1Q6ZVC0 841 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 ILDR2Q71H61 639 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 MNS1Q8NEH6 495 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 NEK1Q96PY6 1258 aa11.49□□□□□ -0.57
TRIM39-203ENST00000396547 DISP2A7MBM2 1401 aa11.48□□□□□ -0.57
TRIM39-203ENST00000396547 POLR3DP05423 398 aaPredicted RBP11.48□□□□□ -0.57
TRIM39-203ENST00000396547 CLCN6P51797 869 aa11.48□□□□□ -0.57
TRIM39-203ENST00000396547 APOBRQ0VD83 1088 aa11.48□□□□□ -0.57
TRIM39-203ENST00000396547 PROSER3Q2NL68 480 aa11.48□□□□□ -0.57
TRIM39-203ENST00000396547 MEX3CQ5U5Q3 659 aaKnown RBP11.48□□□□□ -0.57
TRIM39-203ENST00000396547 ANO10Q9NW15 660 aa11.48□□□□□ -0.57
TRIM39-203ENST00000396547 PRAMEF22A3QJZ6 481 aa11.48□□□□□ -0.57
TRIM39-203ENST00000396547 LMOD1P29536 600 aaPredicted RBP11.48□□□□□ -0.57
TRIM39-203ENST00000396547 DHX40Q8IX18 779 aaKnown RBP11.48□□□□□ -0.57
TRIM39-203ENST00000396547 UBXN4Q92575 508 aa11.48□□□□□ -0.57
TRIM39-203ENST00000396547 MRFAP1L1Q96HT8 127 aa11.48□□□□□ -0.57
TRIM39-203ENST00000396547 XPO4Q9C0E2 1151 aaKnown RBP11.48□□□□□ -0.57
TRIM39-203ENST00000396547 THRAP3Q9Y2W1 955 aaKnown RBP11.48□□□□□ -0.57
TRIM39-203ENST00000396547 SPATA31A5Q5VU36 1347 aa11.48□□□□□ -0.57
TRIM39-203ENST00000396547 SPATA31A7Q8IWB4 1347 aa11.48□□□□□ -0.57
TRIM39-203ENST00000396547 NEMFO60524 1076 aa11.47□□□□□ -0.57
TRIM39-203ENST00000396547 SASH1O94885 1247 aa11.47□□□□□ -0.57
TRIM39-203ENST00000396547 SFPQP23246 707 aaKnown RBP eCLIP11.47□□□□□ -0.57
TRIM39-203ENST00000396547 BARGINQ6ZT62 677 aa11.47□□□□□ -0.57
TRIM39-203ENST00000396547 ARHGEF25Q86VW2 580 aa11.47□□□□□ -0.57
TRIM39-203ENST00000396547 CCDC34Q96HJ3 373 aa11.47□□□□□ -0.57
TRIM39-203ENST00000396547 TRIM34Q9BYJ4 488 aa11.47□□□□□ -0.57
TRIM39-203ENST00000396547 CALCOCO1Q9P1Z2 691 aa11.47□□□□□ -0.57
TRIM39-203ENST00000396547 TNS1Q9HBL0 1735 aaKnown RBP11.47□□□□□ -0.57
TRIM39-203ENST00000396547 E4F1Q66K89 784 aaPredicted RBP11.47□□□□□ -0.57
TRIM39-203ENST00000396547 MAP3K5Q99683 1374 aa11.47□□□□□ -0.57
TRIM39-203ENST00000396547 USP21Q9UK80 565 aa11.47□□□□□ -0.57
TRIM39-203ENST00000396547 GYS2P54840 703 aa11.47□□□□□ -0.57
TRIM39-203ENST00000396547 SCRN1Q12765 414 aa11.47□□□□□ -0.57
TRIM39-203ENST00000396547 PPP1R13BQ96KQ4 1090 aa11.47□□□□□ -0.57
TRIM39-203ENST00000396547 BICC1Q9H694 974 aaKnown RBP11.47□□□□□ -0.57
TRIM39-203ENST00000396547 DPCR1Q3MIW9 517 aa11.46□□□□□ -0.57
TRIM39-203ENST00000396547 TMCO3Q6UWJ1 677 aa11.46□□□□□ -0.57
TRIM39-203ENST00000396547 RBM43Q6ZSC3 357 aaKnown RBP11.46□□□□□ -0.57
TRIM39-203ENST00000396547 SUCLG2Q96I99 432 aa11.46□□□□□ -0.57
TRIM39-203ENST00000396547 NGLY1Q96IV0 654 aa11.46□□□□□ -0.57
TRIM39-203ENST00000396547 SHANK3Q9BYB0 1731 aa11.46□□□□□ -0.58
TRIM39-203ENST00000396547 BTBD11A6QL63 1104 aa11.46□□□□□ -0.58
TRIM39-203ENST00000396547 GCP02774 474 aa11.46□□□□□ -0.58
TRIM39-203ENST00000396547 RXRBP28702 533 aa11.46□□□□□ -0.58
TRIM39-203ENST00000396547 DDX46Q7L014 1031 aaKnown RBP11.46□□□□□ -0.58
TRIM39-203ENST00000396547 GJD4Q96KN9 370 aaPredicted RBP11.46□□□□□ -0.58
TRIM39-203ENST00000396547 CARD6Q9BX69 1037 aa11.46□□□□□ -0.58
TRIM39-203ENST00000396547 ZSWIM4Q9H7M6 989 aa11.46□□□□□ -0.58
TRIM39-203ENST00000396547 PKD1L3Q7Z443 1732 aa11.45□□□□□ -0.58
TRIM39-203ENST00000396547 CDC25BP30305 580 aa11.45□□□□□ -0.58
TRIM39-203ENST00000396547 CERS3Q8IU89 383 aa11.45□□□□□ -0.58
TRIM39-203ENST00000396547 ABTB2Q8N961 1025 aa11.45□□□□□ -0.58
TRIM39-203ENST00000396547 NAT10Q9H0A0 1025 aaKnown RBP11.45□□□□□ -0.58
TRIM39-203ENST00000396547 SBF2Q86WG5 1849 aa11.45□□□□□ -0.58
TRIM39-203ENST00000396547 PTPDC1A2A3K4 754 aa11.45□□□□□ -0.58
TRIM39-203ENST00000396547 HIP1O00291 1037 aa11.45□□□□□ -0.58
TRIM39-203ENST00000396547 NRDCO43847 1150 aa11.45□□□□□ -0.58
TRIM39-203ENST00000396547 PNMA6AP0CW24 399 aaPredicted RBP11.45□□□□□ -0.58
TRIM39-203ENST00000396547 TNNT3P45378 269 aaPredicted RBP11.45□□□□□ -0.58
TRIM39-203ENST00000396547 EIF4A1P60842 406 aaKnown RBP11.45□□□□□ -0.58
TRIM39-203ENST00000396547 ARMCX5Q6P1M9 558 aa11.45□□□□□ -0.58
TRIM39-203ENST00000396547 ERC1Q8IUD2 1116 aa11.45□□□□□ -0.58
TRIM39-203ENST00000396547 STK11IPQ8N1F8 1099 aa11.45□□□□□ -0.58
TRIM39-203ENST00000396547 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.45□□□□□ -0.58
TRIM39-203ENST00000396547 TAF5LO75529 589 aa11.44□□□□□ -0.58
TRIM39-203ENST00000396547 MYL6BP14649 208 aa11.44□□□□□ -0.58
TRIM39-203ENST00000396547 PIP4K2AP48426 406 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms