RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 IQGAP2Q13576 1575 aa14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 PI4KAP2A4QPH2 592 aa14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 PI4KAP1Q8N8J0 262 aa14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 RTL1A6NKG5 1358 aa14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.48□□□□□ -0.09
CCDC88C-204ENST00000389857 MAGEB6P1A0A0J9YX57 407 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 SH3BP5O60239 455 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 CFAP157Q5JU67 520 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 FAM169AQ9Y6X4 670 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 CUL7Q14999 1698 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 CEP128Q6ZU80 1094 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 ATRIPQ8WXE1 791 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 SKILP12757 684 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 MTRF1LQ9UGC7 380 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 ARHGEF11O15085 1522 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 PLCB3Q01970 1234 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 PLS1Q14651 629 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 CDK13Q14004 1512 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 PLCG2P16885 1265 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 KAT6BQ8WYB5 2073 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 FOXO3O43524 673 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 SYT1P21579 422 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 KRT79Q5XKE5 535 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 DPH6Q7L8W6 267 aa14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 SCAF11Q99590 1463 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-204ENST00000389857 PTGS1P23219 599 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 TAF12Q16514 161 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 BRF1Q92994 677 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 FAM212AQ96EL1 285 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 ATP2B3Q16720 1220 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 Q6ZUG5 572 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 TRIM7Q9C029 511 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 DNAI1Q9UI46 699 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 PEG3Q9GZU2 1588 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 MAGI1Q96QZ7 1491 aaPredicted RBP14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 PICALMQ13492 652 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 C20orf194Q5TEA3 1177 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 HS2ST1Q7LGA3 356 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 TMX3Q96JJ7 454 aa14.46□□□□□ -0.09
CCDC88C-204ENST00000389857 PPP1R7Q15435 360 aa14.46□□□□□ -0.1
CCDC88C-204ENST00000389857 CCDC110Q8TBZ0 833 aa14.46□□□□□ -0.1
CCDC88C-204ENST00000389857 MBIPQ9NS73 344 aa14.46□□□□□ -0.1
CCDC88C-204ENST00000389857 DMRT2Q9Y5R5 561 aa14.46□□□□□ -0.1
CCDC88C-204ENST00000389857 HCLS1P14317 486 aaPredicted RBP14.46□□□□□ -0.1
CCDC88C-204ENST00000389857 PLCD3Q8N3E9 789 aa14.46□□□□□ -0.1
CCDC88C-204ENST00000389857 NAP1L4Q99733 375 aaKnown RBP14.46□□□□□ -0.1
CCDC88C-204ENST00000389857 NUCB1Q02818 461 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 AOPEPQ8N6M6 819 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 RHPN1Q8TCX5 695 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 ATP6V0A2Q9Y487 856 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 ADGRL1O94910 1474 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 UBXN1Q04323 297 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 CCDC42Q96M95 316 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 MTUS1Q9ULD2 1270 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 ANKRD36BQ8N2N9 1353 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 CD109Q6YHK3 1445 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 TRIM75PA6NK02 468 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 FAM200AQ8TCP9 573 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 RALGAPBQ86X10 1494 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 ARID5AQ03989 594 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 RNF216Q9NWF9 866 aaPredicted RBP14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 CNPY2Q9Y2B0 182 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 ATP5DP30049 168 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 MCM6Q14566 821 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 NLRP3Q96P20 1036 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 RSPH14Q9UHP6 348 aa14.45□□□□□ -0.1
CCDC88C-204ENST00000389857 CCDC184Q52MB2 194 aa14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 DHX58Q96C10 678 aa14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 SETDB1Q15047 1291 aa14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 CCT6BQ92526 530 aa14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 ABCC5O15440 1437 aa14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 GNA11P29992 359 aa14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 NECAB1Q8N987 351 aa14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 RBM8AQ9Y5S9 174 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 ATP6V1AP38606 617 aa14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 SEL1L2Q5TEA6 688 aa14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 CCDC114Q96M63 670 aa14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 TBC1D32Q96NH3 1257 aa14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 RBM28Q9NW13 759 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 IL15P40933 162 aaPredicted RBP14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 PODXL2Q9NZ53 605 aa14.44□□□□□ -0.1
CCDC88C-204ENST00000389857 DNMBPQ6XZF7 1577 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 USP48Q86UV5 1035 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 KIFAP3Q92845 792 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 STIM2Q9P246 746 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 TNNC1P63316 161 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 CSRNP2Q9H175 543 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 SAMD15Q9P1V8 674 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 FRMD4BQ9Y2L6 1034 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 F8W031 263 aaPredicted RBP14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 PCF11O94913 1555 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 TOPBP1Q92547 1522 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 MARCKSP29966 332 aaPredicted RBP14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 GTF2A1P52655 376 aaPredicted RBP14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 PRXQ9BXM0 1461 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 CRCPO75575 148 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 SEC62Q99442 399 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 CLEC11AQ9Y240 323 aa14.43□□□□□ -0.1
CCDC88C-204ENST00000389857 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms