RNA–Protein interactions for RNA: ENST00000377670.8

HIF3A-205, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HIF3A, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-205ENST00000377670 ZNF790Q6PG37 636 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 STXBP4Q6ZWJ1 553 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 KIF18AQ8NI77 898 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 SBNO1A3KN83 1393 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 PREX2Q70Z35 1606 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 SMTNL1A8MU46 457 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 TNNT1P13805 278 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 CFAP100Q494V2 611 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 CCDC24Q8N4L8 307 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 FAM89AQ96GI7 184 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 C16orf45Q96MC5 204 aaPredicted RBP12.41□□□□□ -0.42
HIF3A-205ENST00000377670 SLC5A4Q9NY91 659 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 TFIP11Q9UBB9 837 aaKnown RBP12.41□□□□□ -0.42
HIF3A-205ENST00000377670 NOP2P46087 812 aaKnown RBP12.41□□□□□ -0.42
HIF3A-205ENST00000377670 C2CD5Q86YS7 1000 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 GPATCH11Q8N954 259 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 CDC42BPAQ5VT25 1732 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 MAST3O60307 1309 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 SHTN1A0MZ66 631 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 ANKRD62A6NC57 917 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 CETN2P41208 172 aa12.41□□□□□ -0.42
HIF3A-205ENST00000377670 ZSCAN31Q96LW9 406 aaPredicted RBP12.41□□□□□ -0.42
HIF3A-205ENST00000377670 EPB41L2O43491 1005 aaKnown RBP12.4□□□□□ -0.42
HIF3A-205ENST00000377670 SSRP1Q08945 709 aaKnown RBP12.4□□□□□ -0.42
HIF3A-205ENST00000377670 ARHGAP29Q52LW3 1261 aa12.4□□□□□ -0.42
HIF3A-205ENST00000377670 NDUFB9Q9Y6M9 179 aa12.4□□□□□ -0.42
HIF3A-205ENST00000377670 USP19O94966 1318 aa12.4□□□□□ -0.42
HIF3A-205ENST00000377670 URI1O94763 535 aaPredicted RBP12.4□□□□□ -0.42
HIF3A-205ENST00000377670 SEPT7Q16181 437 aaKnown RBP12.4□□□□□ -0.42
HIF3A-205ENST00000377670 KIF2AO00139 706 aaPredicted RBP12.4□□□□□ -0.42
HIF3A-205ENST00000377670 KIF20AO95235 890 aa12.4□□□□□ -0.42
HIF3A-205ENST00000377670 IRX3P78415 501 aaPredicted RBP12.4□□□□□ -0.42
HIF3A-205ENST00000377670 LINS1Q8NG48 757 aa12.4□□□□□ -0.42
HIF3A-205ENST00000377670 CRACR2AQ9BSW2 395 aa12.4□□□□□ -0.42
HIF3A-205ENST00000377670 CLIP2Q9UDT6 1046 aa12.4□□□□□ -0.42
HIF3A-205ENST00000377670 PRDM15P57071 1507 aaPredicted RBP12.4□□□□□ -0.42
HIF3A-205ENST00000377670 CHL1O00533 1208 aa12.4□□□□□ -0.42
HIF3A-205ENST00000377670 CASQ1P31415 396 aa12.4□□□□□ -0.42
HIF3A-205ENST00000377670 SFPQP23246 707 aaKnown RBP eCLIP12.4□□□□□ -0.42
HIF3A-205ENST00000377670 ERVK-7P63135 1459 aa12.4□□□□□ -0.42
HIF3A-205ENST00000377670 TFCP2Q12800 502 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 CHST3Q7LGC8 479 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 SYCP3Q8IZU3 236 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 TRMT1Q9NXH9 659 aaKnown RBP12.39□□□□□ -0.43
HIF3A-205ENST00000377670 ROBO2Q9HCK4 1378 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 NBPF7P0C2Y1 421 aaPredicted RBP12.39□□□□□ -0.43
HIF3A-205ENST00000377670 SPOUT1Q5T280 376 aaKnown RBP12.39□□□□□ -0.43
HIF3A-205ENST00000377670 DCTPP1Q9H773 170 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 SLC4A4Q9Y6R1 1079 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 PLEKHG3A1L390 1219 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 CCDC148Q8NFR7 591 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 ANAPC15P60006 121 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 DLGAP5Q15398 846 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 KIAA1328Q86T90 577 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 PLEKHM2Q8IWE5 1019 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 TMX1Q9H3N1 280 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 TMEM67Q5HYA8 995 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 GBP3Q9H0R5 595 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 LIMCH1Q9UPQ0 1083 aa12.39□□□□□ -0.43
HIF3A-205ENST00000377670 PNMA6EA0A0J9YXQ4 647 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 DYNC1I1O14576 645 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 IL17REQ8NFR9 667 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 ZNF594Q96JF6 807 aaPredicted RBP12.38□□□□□ -0.43
HIF3A-205ENST00000377670 TTC6Q86TZ1 520 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 ZBTB24O43167 697 aaPredicted RBP12.38□□□□□ -0.43
HIF3A-205ENST00000377670 CPA1P15085 419 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 TIMM10P62072 90 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 RAB3GAP1Q15042 981 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 USP48Q86UV5 1035 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 CCDC117Q8IWD4 279 aaPredicted RBP12.38□□□□□ -0.43
HIF3A-205ENST00000377670 NLGN1Q8N2Q7 840 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 ZNF496Q96IT1 587 aaPredicted RBP12.38□□□□□ -0.43
HIF3A-205ENST00000377670 INCENPQ9NQS7 918 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 NPC1L1Q9UHC9 1359 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 PRR36Q9H6K5 1346 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 MAGEB6P1A0A0J9YX57 407 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 HMGB1P09429 215 aaKnown RBP12.38□□□□□ -0.43
HIF3A-205ENST00000377670 CETN1Q12798 172 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 MICU3Q86XE3 530 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 ERMNQ8TAM6 284 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 CNKSR1Q969H4 720 aa12.38□□□□□ -0.43
HIF3A-205ENST00000377670 ESYT1Q9BSJ8 1104 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 RBM27Q9P2N5 1060 aaKnown RBP12.37□□□□□ -0.43
HIF3A-205ENST00000377670 GJB2P29033 226 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 DYDC1Q8WWB3 177 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 CALML4Q96GE6 196 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 PABPN1LA6NDY0 278 aaKnown RBP12.37□□□□□ -0.43
HIF3A-205ENST00000377670 ZSCAN12O43309 604 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 ALDH1L1O75891 902 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 TNFAIP1Q13829 316 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 KDM5CP41229 1560 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 ZMYM4Q5VZL5 1548 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 CNGA1P29973 690 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 APBB1IPQ7Z5R6 666 aaPredicted RBP12.37□□□□□ -0.43
HIF3A-205ENST00000377670 TICAM2Q86XR7 235 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 ZNF354CQ86Y25 554 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 IPO4Q8TEX9 1081 aaKnown RBP12.37□□□□□ -0.43
HIF3A-205ENST00000377670 TCHPQ9BT92 498 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 ARHGEF10LQ9HCE6 1279 aa12.37□□□□□ -0.43
HIF3A-205ENST00000377670 ADCY5O95622 1261 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms