RNA–Protein interactions for RNA: ENST00000373548.7

HDAC1-201, Transcript of histone deacetylase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDAC1, Length 2,124 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-201ENST00000373548 TCEANC2Q96MN5 208 aa23.39■■□□□ 1.33
HDAC1-201ENST00000373548 TPCN1Q9ULQ1 816 aa23.39■■□□□ 1.33
HDAC1-201ENST00000373548 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.39■■□□□ 1.33
HDAC1-201ENST00000373548 CASZ1Q86V15 1759 aa23.39■■□□□ 1.33
HDAC1-201ENST00000373548 ZFYP08048 801 aaPredicted RBP23.38■■□□□ 1.33
HDAC1-201ENST00000373548 ST3GAL1Q11201 340 aa23.38■■□□□ 1.33
HDAC1-201ENST00000373548 CCDC83Q8IWF9 413 aa23.38■■□□□ 1.33
HDAC1-201ENST00000373548 LPIN2Q92539 896 aa23.38■■□□□ 1.33
HDAC1-201ENST00000373548 MPHOSPH8Q99549 860 aa23.38■■□□□ 1.33
HDAC1-201ENST00000373548 LAMA4Q16363 1823 aa23.38■■□□□ 1.33
HDAC1-201ENST00000373548 LY75O60449 1722 aa23.38■■□□□ 1.33
HDAC1-201ENST00000373548 MYO5AQ9Y4I1 1855 aaKnown RBP23.38■■□□□ 1.33
HDAC1-201ENST00000373548 HSPD1P10809 573 aaKnown RBP23.38■■□□□ 1.33
HDAC1-201ENST00000373548 TAF1LQ8IZX4 1826 aa23.37■■□□□ 1.33
HDAC1-201ENST00000373548 RGL2O15211 777 aa23.37■■□□□ 1.33
HDAC1-201ENST00000373548 PHKA1P46020 1223 aa23.37■■□□□ 1.33
HDAC1-201ENST00000373548 CCDC102BQ68D86 513 aa23.37■■□□□ 1.33
HDAC1-201ENST00000373548 CHAMP1Q96JM3 812 aa23.37■■□□□ 1.33
HDAC1-201ENST00000373548 NEK1Q96PY6 1258 aa23.37■■□□□ 1.33
HDAC1-201ENST00000373548 BCL2L12Q9HB09 334 aa23.37■■□□□ 1.33
HDAC1-201ENST00000373548 COL4A1P02462 1669 aa23.37■■□□□ 1.33
HDAC1-201ENST00000373548 RPS6KA4O75676 772 aa23.36■■□□□ 1.33
HDAC1-201ENST00000373548 TOB2Q14106 344 aaPredicted RBP23.36■■□□□ 1.33
HDAC1-201ENST00000373548 ATRNO75882 1429 aa23.36■■□□□ 1.33
HDAC1-201ENST00000373548 ARID4AP29374 1257 aaPredicted RBP23.36■■□□□ 1.33
HDAC1-201ENST00000373548 ANKRD1Q15327 319 aa23.36■■□□□ 1.33
HDAC1-201ENST00000373548 ERFEQ4G0M1 354 aa23.36■■□□□ 1.33
HDAC1-201ENST00000373548 LMBRD1Q9NUN5 540 aa23.36■■□□□ 1.33
HDAC1-201ENST00000373548 CCNL1Q9UK58 526 aaPredicted RBP23.36■■□□□ 1.33
HDAC1-201ENST00000373548 SMC3Q9UQE7 1217 aa23.36■■□□□ 1.33
HDAC1-201ENST00000373548 STOX1Q6ZVD7 989 aa23.35■■□□□ 1.33
HDAC1-201ENST00000373548 IGHMBP2P38935 993 aaKnown RBP23.35■■□□□ 1.33
HDAC1-201ENST00000373548 WASHC4Q2M389 1173 aa23.35■■□□□ 1.33
HDAC1-201ENST00000373548 APPBP2Q92624 585 aa23.35■■□□□ 1.33
HDAC1-201ENST00000373548 WDR33Q9C0J8 1336 aaKnown RBP23.34■■□□□ 1.33
HDAC1-201ENST00000373548 ONECUT3O60422 494 aaPredicted RBP23.34■■□□□ 1.33
HDAC1-201ENST00000373548 UQCRFS1P1P0C7P4 283 aa23.34■■□□□ 1.33
HDAC1-201ENST00000373548 SLC5A1P13866 664 aa23.34■■□□□ 1.33
HDAC1-201ENST00000373548 TBC1D9BQ66K14 1250 aa23.34■■□□□ 1.33
HDAC1-201ENST00000373548 NECAB1Q8N987 351 aa23.34■■□□□ 1.33
HDAC1-201ENST00000373548 NARFQ9UHQ1 456 aa23.34■■□□□ 1.33
HDAC1-201ENST00000373548 SNAP23O00161 211 aa23.33■■□□□ 1.33
HDAC1-201ENST00000373548 GNPATO15228 680 aa23.33■■□□□ 1.33
HDAC1-201ENST00000373548 A0A0G2JLW4 131 aa23.33■■□□□ 1.32
HDAC1-201ENST00000373548 BICDL1Q6ZP65 573 aa23.33■■□□□ 1.32
HDAC1-201ENST00000373548 C3orf67Q6ZVT6 689 aa23.33■■□□□ 1.32
HDAC1-201ENST00000373548 PIH1D3Q9NQM4 214 aaKnown RBP23.33■■□□□ 1.32
HDAC1-201ENST00000373548 SRP68Q9UHB9 627 aaKnown RBP23.33■■□□□ 1.32
HDAC1-201ENST00000373548 COL24A1Q17RW2 1714 aa23.32■■□□□ 1.32
HDAC1-201ENST00000373548 FOXP2O15409 715 aa23.32■■□□□ 1.32
HDAC1-201ENST00000373548 TTF1Q15361 905 aaPredicted RBP23.32■■□□□ 1.32
HDAC1-201ENST00000373548 KLHL40Q2TBA0 621 aa23.32■■□□□ 1.32
HDAC1-201ENST00000373548 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.32■■□□□ 1.322e-7■■■□□ 15.2
HDAC1-201ENST00000373548 PUS7LQ9H0K6 701 aaKnown RBP23.32■■□□□ 1.32
HDAC1-201ENST00000373548 TAF1P21675 1872 aa23.32■■□□□ 1.32
HDAC1-201ENST00000373548 DDX49Q9Y6V7 483 aaKnown RBP23.32■■□□□ 1.32
HDAC1-201ENST00000373548 A0A1B0GUL6 1792 aa23.31■■□□□ 1.32
HDAC1-201ENST00000373548 SYT1P21579 422 aa23.31■■□□□ 1.32
HDAC1-201ENST00000373548 GJB2P29033 226 aa23.31■■□□□ 1.32
HDAC1-201ENST00000373548 SF3B3Q15393 1217 aaKnown RBP23.31■■□□□ 1.32
HDAC1-201ENST00000373548 TRPC5Q9UL62 973 aaPredicted RBP23.31■■□□□ 1.32
HDAC1-201ENST00000373548 ADD2P35612 726 aa23.3■■□□□ 1.32
HDAC1-201ENST00000373548 AMIGO3Q86WK7 504 aa23.3■■□□□ 1.32
HDAC1-201ENST00000373548 SEPT12Q8IYM1 358 aa23.3■■□□□ 1.32
HDAC1-201ENST00000373548 CDC5LQ99459 802 aaKnown RBP23.3■■□□□ 1.32
HDAC1-201ENST00000373548 FSD2A1L4K1 749 aa23.3■■□□□ 1.32
HDAC1-201ENST00000373548 DTNBO60941 627 aa23.3■■□□□ 1.32
HDAC1-201ENST00000373548 PRPF40AO75400 957 aaKnown RBP23.3■■□□□ 1.32
HDAC1-201ENST00000373548 CHRNDQ07001 517 aa23.3■■□□□ 1.32
HDAC1-201ENST00000373548 ZSCAN25Q6NSZ9 544 aa23.3■■□□□ 1.32
HDAC1-201ENST00000373548 STX6O43752 255 aa23.29■■□□□ 1.32
HDAC1-201ENST00000373548 TTLL5Q6EMB2 1281 aa23.29■■□□□ 1.32
HDAC1-201ENST00000373548 RTCBQ9Y3I0 505 aaKnown RBP23.29■■□□□ 1.32
HDAC1-201ENST00000373548 DOCK2Q92608 1830 aa23.29■■□□□ 1.32
HDAC1-201ENST00000373548 C4BP0C0L5 1744 aa23.29■■□□□ 1.32
HDAC1-201ENST00000373548 HMGB1P09429 215 aaKnown RBP23.29■■□□□ 1.32
HDAC1-201ENST00000373548 SLC10A5Q5PT55 438 aa23.29■■□□□ 1.32
HDAC1-201ENST00000373548 SLC9C2Q5TAH2 1124 aa23.29■■□□□ 1.32
HDAC1-201ENST00000373548 Q6ZUG5 572 aa23.29■■□□□ 1.32
HDAC1-201ENST00000373548 C4AP0C0L4 1744 aa23.28■■□□□ 1.32
HDAC1-201ENST00000373548 E7EWF7 191 aa23.28■■□□□ 1.32
HDAC1-201ENST00000373548 ZPR1O75312 459 aa23.28■■□□□ 1.32
HDAC1-201ENST00000373548 ZSCAN22P10073 491 aaPredicted RBP23.28■■□□□ 1.32
HDAC1-201ENST00000373548 TCHHQ07283 1943 aa23.28■■□□□ 1.32
HDAC1-201ENST00000373548 GPAA1O43292 621 aa23.27■■□□□ 1.32
HDAC1-201ENST00000373548 IDH1O75874 414 aaKnown RBP23.27■■□□□ 1.32
HDAC1-201ENST00000373548 RASGRF1Q13972 1273 aa23.27■■□□□ 1.32
HDAC1-201ENST00000373548 DHX32Q7L7V1 743 aaKnown RBP23.27■■□□□ 1.32
HDAC1-201ENST00000373548 SPATA5Q8NB90 893 aa23.27■■□□□ 1.32
HDAC1-201ENST00000373548 UBE3CQ15386 1083 aa23.27■■□□□ 1.32
HDAC1-201ENST00000373548 GOLGA6L3A6NEY3 463 aa23.26■■□□□ 1.31
HDAC1-201ENST00000373548 GTF2E1P29083 439 aaPredicted RBP23.26■■□□□ 1.31
HDAC1-201ENST00000373548 ANKRD18AQ8IVF6 992 aa23.26■■□□□ 1.31
HDAC1-201ENST00000373548 ARHGEF1Q92888 912 aaKnown RBP23.26■■□□□ 1.31
HDAC1-201ENST00000373548 SETDB2Q96T68 719 aa23.26■■□□□ 1.31
HDAC1-201ENST00000373548 CTNNA3Q9UI47 895 aa23.26■■□□□ 1.31
HDAC1-201ENST00000373548 PDE6AP16499 860 aa23.26■■□□□ 1.31
HDAC1-201ENST00000373548 EXOSC10Q01780 885 aaKnown RBP23.26■■□□□ 1.31
HDAC1-201ENST00000373548 LRRC2Q9BYS8 371 aa23.26■■□□□ 1.31
HDAC1-201ENST00000373548 NYXQ9GZU5 481 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms