RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 SERPINB4P48594 390 aa4.88□□□□□ -1.63
MCF2-203ENST00000370576 MDM2Q00987 491 aaPredicted RBP4.88□□□□□ -1.63
MCF2-203ENST00000370576 TRIM34Q9BYJ4 488 aa4.88□□□□□ -1.63
MCF2-203ENST00000370576 ARNT2Q9HBZ2 717 aa4.88□□□□□ -1.63
MCF2-203ENST00000370576 SUPT16HQ9Y5B9 1047 aaKnown RBP4.88□□□□□ -1.63
MCF2-203ENST00000370576 JCADQ9P266 1359 aa4.88□□□□□ -1.63
MCF2-203ENST00000370576 TSNAXIP1Q2TAA8 658 aa4.88□□□□□ -1.63
MCF2-203ENST00000370576 ZC3H12AQ5D1E8 599 aaKnown RBP4.88□□□□□ -1.63
MCF2-203ENST00000370576 ANKRD13DQ6ZTN6 518 aa4.88□□□□□ -1.63
MCF2-203ENST00000370576 MRS2Q9HD23 443 aa4.88□□□□□ -1.63
MCF2-203ENST00000370576 CNTN3Q9P232 1028 aa4.88□□□□□ -1.63
MCF2-203ENST00000370576 NRDCO43847 1150 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 LMOD1P29536 600 aaPredicted RBP4.87□□□□□ -1.63
MCF2-203ENST00000370576 ARHGAP4P98171 946 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 PDE3AQ14432 1141 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 INO80DQ53TQ3 878 aaPredicted RBP4.87□□□□□ -1.63
MCF2-203ENST00000370576 FILIP1Q7Z7B0 1213 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 RSPH9Q9H1X1 276 aaPredicted RBP4.87□□□□□ -1.63
MCF2-203ENST00000370576 ACBD3Q9H3P7 528 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 IQSEC3Q9UPP2 1182 aaPredicted RBP4.87□□□□□ -1.63
MCF2-203ENST00000370576 FRMD4BQ9Y2L6 1034 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 MAP3K19Q56UN5 1328 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 BRCA1P38398 1863 aaKnown RBP4.87□□□□□ -1.63
MCF2-203ENST00000370576 CHL1O00533 1208 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 HOXB7P09629 217 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 HOXC9P31274 260 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 SSTR3P32745 418 aaPredicted RBP4.87□□□□□ -1.63
MCF2-203ENST00000370576 MTHFSP49914 203 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 EIF4A2Q14240 407 aaKnown RBP4.87□□□□□ -1.63
MCF2-203ENST00000370576 NBPF10Q6P3W6 841 aaKnown RBP4.87□□□□□ -1.63
MCF2-203ENST00000370576 LRP10Q7Z4F1 713 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 G3BP2Q9UN86 482 aaKnown RBP4.87□□□□□ -1.63
MCF2-203ENST00000370576 PRKAB1Q9Y478 270 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 MYH15Q9Y2K3 1946 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 CCDC163A0A0D9SF12 145 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 GOLIM4O00461 696 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 TSPAN7P41732 249 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 KCTD2Q14681 263 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 ACBD5Q5T8D3 534 aaPredicted RBP4.87□□□□□ -1.63
MCF2-203ENST00000370576 ZNF830Q96NB3 372 aaPredicted RBP4.87□□□□□ -1.63
MCF2-203ENST00000370576 PNNQ9H307 717 aaKnown RBP4.87□□□□□ -1.63
MCF2-203ENST00000370576 CLIC5Q9NZA1 410 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 RIC1Q4ADV7 1423 aa4.87□□□□□ -1.63
MCF2-203ENST00000370576 TMPOP42166 694 aaKnown RBP4.86□□□□□ -1.63
MCF2-203ENST00000370576 CLK2P49760 499 aaKnown RBP4.86□□□□□ -1.63
MCF2-203ENST00000370576 NFE2L2Q16236 605 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 ARMCX6Q7L4S7 300 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 KIAA0907Q7Z7F0 614 aaPredicted RBP4.86□□□□□ -1.63
MCF2-203ENST00000370576 RSPH1Q8WYR4 309 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 AGBL1Q96MI9 1066 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 NPDC1Q9NQX5 325 aaPredicted RBP4.86□□□□□ -1.63
MCF2-203ENST00000370576 CWC25Q9NXE8 425 aaPredicted RBP4.86□□□□□ -1.63
MCF2-203ENST00000370576 BCL9LQ86UU0 1499 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 ATRNO75882 1429 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 UTYO14607 1347 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 RRP1P56182 461 aaKnown RBP4.86□□□□□ -1.63
MCF2-203ENST00000370576 AXDND1Q5T1B0 1012 aaPredicted RBP4.86□□□□□ -1.63
MCF2-203ENST00000370576 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.86□□□□□ -1.63
MCF2-203ENST00000370576 TSR2Q969E8 191 aaKnown RBP4.86□□□□□ -1.63
MCF2-203ENST00000370576 GPCPD1Q9NPB8 672 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 ACAD8Q9UKU7 415 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 TNRC6CQ9HCJ0 1690 aaKnown RBP4.86□□□□□ -1.63
MCF2-203ENST00000370576 LDHAP00338 332 aaKnown RBP4.86□□□□□ -1.63
MCF2-203ENST00000370576 ATP2B1P20020 1258 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 TNNI2P48788 182 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 NME9Q86XW9 330 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 KCNH5Q8NCM2 988 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 ARPC5LQ9BPX5 153 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 PHF8Q9UPP1 1060 aa4.86□□□□□ -1.63
MCF2-203ENST00000370576 ABL2P42684 1182 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 FMR1Q06787 632 aaKnown RBP eCLIP4.85□□□□□ -1.63
MCF2-203ENST00000370576 CCDC93Q567U6 631 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 LARP1BQ659C4 914 aaKnown RBP4.85□□□□□ -1.63
MCF2-203ENST00000370576 TBC1D9Q6ZT07 1266 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 MAP3K5Q99683 1374 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 MYH14Q7Z406 1995 aaKnown RBP4.85□□□□□ -1.63
MCF2-203ENST00000370576 CBFA2T2O43439 604 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 VAMP4O75379 141 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 NEXNQ0ZGT2 675 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 JDP2Q8WYK2 163 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 TSC1Q92574 1164 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 POLR3EQ9NVU0 708 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 TIAM2Q8IVF5 1701 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 CDK5RAP2Q96SN8 1893 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 DNAJC6O75061 913 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 SCNN1AP37088 669 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 TTLL12Q14166 644 aaPredicted RBP4.85□□□□□ -1.63
MCF2-203ENST00000370576 SOGA3Q5TF21 947 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 ERAP2Q6P179 960 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 BEGAINQ9BUH8 593 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 TMX1Q9H3N1 280 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 ZSWIM4Q9H7M6 989 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 KANSL2Q9H9L4 492 aa4.85□□□□□ -1.63
MCF2-203ENST00000370576 AKAP11Q9UKA4 1901 aa4.84□□□□□ -1.63
MCF2-203ENST00000370576 NOS2P35228 1153 aa4.84□□□□□ -1.63
MCF2-203ENST00000370576 CLK1P49759 484 aaKnown RBP4.84□□□□□ -1.63
MCF2-203ENST00000370576 BRINP3Q76B58 766 aa4.84□□□□□ -1.63
MCF2-203ENST00000370576 MORC1Q86VD1 984 aa4.84□□□□□ -1.63
MCF2-203ENST00000370576 ALDH8A1Q9H2A2 487 aaPredicted RBP4.84□□□□□ -1.63
MCF2-203ENST00000370576 DDX41Q9UJV9 622 aaKnown RBP4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms