RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 HELLSQ9NRZ9 838 aa17.17■□□□□ 0.34
COL17A1-201ENST00000353479 PAF1Q8N7H5 531 aa17.17■□□□□ 0.34
COL17A1-201ENST00000353479 CCDC148Q8NFR7 591 aa17.17■□□□□ 0.34
COL17A1-201ENST00000353479 AK2P54819 239 aa17.17■□□□□ 0.34
COL17A1-201ENST00000353479 TCIRG1Q13488 830 aa17.17■□□□□ 0.34
COL17A1-201ENST00000353479 IL27Q8NEV9 243 aa17.17■□□□□ 0.34
COL17A1-201ENST00000353479 SAP30BPQ9UHR5 308 aaKnown RBP17.16■□□□□ 0.34
COL17A1-201ENST00000353479 EPB41L2O43491 1005 aaKnown RBP17.16■□□□□ 0.34
COL17A1-201ENST00000353479 NAPAP54920 295 aa17.16■□□□□ 0.34
COL17A1-201ENST00000353479 HSP90B2PQ58FF3 399 aa17.16■□□□□ 0.34
COL17A1-201ENST00000353479 FKBP15Q5T1M5 1219 aa17.16■□□□□ 0.34
COL17A1-201ENST00000353479 ZNF397Q8NF99 534 aaPredicted RBP17.16■□□□□ 0.34
COL17A1-201ENST00000353479 H0YIN7 160 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 CCDC181Q5TID7 509 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 TTLL7Q6ZT98 887 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 TEX11Q8IYF3 940 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 PLA2R1Q13018 1463 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 AMPD3Q01432 767 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 ISM2Q6H9L7 571 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 RTL9Q8NET4 1388 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 ZKSCAN3Q9BRR0 538 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 MYO6Q9UM54 1294 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 RXRAP19793 462 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 DHX32Q7L7V1 743 aaKnown RBP17.15■□□□□ 0.34
COL17A1-201ENST00000353479 ARMT1Q9H993 441 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 GJA3Q9Y6H8 435 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 SYNMO15061 1565 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 CARD10Q9BWT7 1032 aa17.15■□□□□ 0.34
COL17A1-201ENST00000353479 PLEKHF1Q96S99 279 aa17.14■□□□□ 0.34
COL17A1-201ENST00000353479 NDUFB9Q9Y6M9 179 aa17.14■□□□□ 0.34
COL17A1-201ENST00000353479 CALM1P0DP23 149 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 CALM2P0DP24 149 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 CALM3P0DP25 149 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 UBE2HP62256 183 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 DPP8Q6V1X1 898 aaPredicted RBP17.14■□□□□ 0.33
COL17A1-201ENST00000353479 KIF20AO95235 890 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 CDR1P51861 262 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 RUFY3Q7L099 469 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 LPIN2Q92539 896 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 GRM1Q13255 1194 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 TEX35Q5T0J7 233 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 KIAA1328Q86T90 577 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 CCDC102BQ68D86 513 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 RBM27Q9P2N5 1060 aaKnown RBP17.14■□□□□ 0.33
COL17A1-201ENST00000353479 CNPY2Q9Y2B0 182 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 MAP3K4Q9Y6R4 1608 aa17.14■□□□□ 0.33
COL17A1-201ENST00000353479 ADCY10Q96PN6 1610 aa17.13■□□□□ 0.33
COL17A1-201ENST00000353479 USP26Q9BXU7 913 aa17.13■□□□□ 0.33
COL17A1-201ENST00000353479 QTRT2Q9H974 415 aaKnown RBP17.13■□□□□ 0.33
COL17A1-201ENST00000353479 FGFR1OPO95684 399 aaKnown RBP17.13■□□□□ 0.33
COL17A1-201ENST00000353479 TTC6Q86TZ1 520 aa17.13■□□□□ 0.33
COL17A1-201ENST00000353479 IGSF1Q8N6C5 1336 aa17.13■□□□□ 0.33
COL17A1-201ENST00000353479 NF2P35240 595 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 CPA1P15085 419 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 SFPQP23246 707 aaKnown RBP eCLIP17.12■□□□□ 0.33
COL17A1-201ENST00000353479 TRAF1Q13077 416 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 CACNA2D4Q7Z3S7 1137 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 SEC24BO95487 1268 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 SKIDA1Q1XH10 827 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 MSL1Q68DK7 614 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 SMARCC2Q8TAQ2 1214 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 MROH5Q6ZUA9 1318 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 BAG6P46379 1132 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 RRP36Q96EU6 259 aaKnown RBP17.12■□□□□ 0.33
COL17A1-201ENST00000353479 ARAP3Q8WWN8 1544 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 SNX21Q969T3 373 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 ASAP1Q9ULH1 1129 aa17.12■□□□□ 0.33
COL17A1-201ENST00000353479 STX1AQ16623 288 aa17.11■□□□□ 0.33
COL17A1-201ENST00000353479 FAM227BQ96M60 508 aa17.11■□□□□ 0.33
COL17A1-201ENST00000353479 PYM1Q9BRP8 204 aaKnown RBP17.11■□□□□ 0.33
COL17A1-201ENST00000353479 RTL1A6NKG5 1358 aa17.11■□□□□ 0.33
COL17A1-201ENST00000353479 KDRP35968 1356 aa17.11■□□□□ 0.33
COL17A1-201ENST00000353479 TOP1P11387 765 aaKnown RBP17.11■□□□□ 0.33
COL17A1-201ENST00000353479 SYKP43405 635 aa17.11■□□□□ 0.33
COL17A1-201ENST00000353479 ARHGAP29Q52LW3 1261 aa17.11■□□□□ 0.33
COL17A1-201ENST00000353479 ERCC4Q92889 916 aaPredicted RBP17.11■□□□□ 0.33
COL17A1-201ENST00000353479 TRPC5Q9UL62 973 aaPredicted RBP17.11■□□□□ 0.33
COL17A1-201ENST00000353479 CTSWP56202 376 aa17.11■□□□□ 0.33
COL17A1-201ENST00000353479 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.11■□□□□ 0.33
COL17A1-201ENST00000353479 MARCKSP29966 332 aaPredicted RBP17.11■□□□□ 0.33
COL17A1-201ENST00000353479 LMOD1P29536 600 aaPredicted RBP17.1■□□□□ 0.33
COL17A1-201ENST00000353479 TNNT3P45378 269 aaPredicted RBP17.1■□□□□ 0.33
COL17A1-201ENST00000353479 KANK3Q6NY19 840 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 APPBP2Q92624 585 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 USP44Q9H0E7 712 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 C6orf50Q9HD87 102 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 WDR17Q8IZU2 1322 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 IQGAP3Q86VI3 1631 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 LOC102724428A0A0B4J2F2 783 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 B4E1Z4 1266 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 SIK1P57059 783 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 PLS1Q14651 629 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 ENOX2Q16206 610 aaKnown RBP17.1■□□□□ 0.33
COL17A1-201ENST00000353479 CCDC112Q8NEF3 446 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 MPHOSPH6Q99547 160 aaKnown RBP17.1■□□□□ 0.33
COL17A1-201ENST00000353479 PTPDC1A2A3K4 754 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 GPAA1O43292 621 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 F13A1P00488 732 aa17.1■□□□□ 0.33
COL17A1-201ENST00000353479 PRKCSHP14314 528 aaPredicted RBP17.1■□□□□ 0.33
COL17A1-201ENST00000353479 MTIF2P46199 727 aaKnown RBP17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms