RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SYT17Q9BSW7 474 aa11.23□□□□□ -0.61
USP4-202ENST00000351842 FSD1Q9BTV5 496 aa11.23□□□□□ -0.61
USP4-202ENST00000351842 KCNQ5Q9NR82 932 aa11.23□□□□□ -0.61
USP4-202ENST00000351842 ECHDC1Q9NTX5 307 aa11.23□□□□□ -0.61
USP4-202ENST00000351842 RASSF7Q02833 373 aa11.23□□□□□ -0.61
USP4-202ENST00000351842 CNKSR1Q969H4 720 aa11.23□□□□□ -0.61
USP4-202ENST00000351842 AKAP2Q9Y2D5 859 aa11.23□□□□□ -0.61
USP4-202ENST00000351842 SPEF2Q9C093 1822 aa11.23□□□□□ -0.61
USP4-202ENST00000351842 BCORQ6W2J9 1755 aa11.23□□□□□ -0.61
USP4-202ENST00000351842 GSPT1P15170 499 aaKnown RBP11.22□□□□□ -0.61
USP4-202ENST00000351842 CAVIN4Q5BKX8 364 aa11.22□□□□□ -0.61
USP4-202ENST00000351842 STK11IPQ8N1F8 1099 aa11.22□□□□□ -0.61
USP4-202ENST00000351842 MROH5Q6ZUA9 1318 aa11.22□□□□□ -0.61
USP4-202ENST00000351842 RREB1Q92766 1687 aa11.22□□□□□ -0.61
USP4-202ENST00000351842 PPIP5K2O43314 1243 aa11.22□□□□□ -0.61
USP4-202ENST00000351842 BBOX1O75936 387 aa11.22□□□□□ -0.61
USP4-202ENST00000351842 ZAP70P43403 619 aa11.22□□□□□ -0.61
USP4-202ENST00000351842 MFAP1P55081 439 aaKnown RBP11.22□□□□□ -0.61
USP4-202ENST00000351842 SDSP20132 328 aa11.22□□□□□ -0.61
USP4-202ENST00000351842 LPIN2Q92539 896 aa11.22□□□□□ -0.61
USP4-202ENST00000351842 CACNA1SQ13698 1873 aa11.22□□□□□ -0.61
USP4-202ENST00000351842 RAD17O75943 681 aa11.21□□□□□ -0.61
USP4-202ENST00000351842 CWC27Q6UX04 472 aaKnown RBP11.21□□□□□ -0.61
USP4-202ENST00000351842 LARGE2Q8N3Y3 721 aa11.21□□□□□ -0.61
USP4-202ENST00000351842 TBC1D16Q8TBP0 767 aa11.21□□□□□ -0.61
USP4-202ENST00000351842 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.21□□□□□ -0.61
USP4-202ENST00000351842 XDHP47989 1333 aa11.21□□□□□ -0.61
USP4-202ENST00000351842 ATP6V0A2Q9Y487 856 aa11.21□□□□□ -0.62
USP4-202ENST00000351842 ZNF831Q5JPB2 1677 aa11.21□□□□□ -0.62
USP4-202ENST00000351842 RIC1Q4ADV7 1423 aa11.21□□□□□ -0.62
USP4-202ENST00000351842 MYH3P11055 1940 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 CIAO1O76071 339 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 KCNA3P22001 575 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 HIBADHP31937 336 aaKnown RBP11.2□□□□□ -0.62
USP4-202ENST00000351842 GTF2IP78347 998 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 RASGRF1Q13972 1273 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 RAI14Q9P0K7 980 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 LRP2BPQ9P2M1 347 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 MCAMP43121 646 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 CRAMP1Q96RY5 1269 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 ERC2O15083 957 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 VGLL2Q8N8G2 317 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 FAM84BQ96KN1 310 aaPredicted RBP11.2□□□□□ -0.62
USP4-202ENST00000351842 SGIP1Q9BQI5 828 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 ANKRD2Q9GZV1 360 aa11.2□□□□□ -0.62
USP4-202ENST00000351842 SCAF8Q9UPN6 1271 aaKnown RBP11.2□□□□□ -0.62
USP4-202ENST00000351842 DDX60Q8IY21 1712 aaKnown RBP11.19□□□□□ -0.62
USP4-202ENST00000351842 TTC22Q5TAA0 569 aa11.19□□□□□ -0.62
USP4-202ENST00000351842 HOXA10P31260 410 aaPredicted RBP11.19□□□□□ -0.62
USP4-202ENST00000351842 MIGA1Q8NAN2 632 aa11.19□□□□□ -0.62
USP4-202ENST00000351842 SEC62Q99442 399 aaKnown RBP11.19□□□□□ -0.62
USP4-202ENST00000351842 GJA3Q9Y6H8 435 aa11.19□□□□□ -0.62
USP4-202ENST00000351842 GLRX3O76003 335 aaKnown RBP11.18□□□□□ -0.62
USP4-202ENST00000351842 CCDC129Q6ZRS4 1044 aa11.18□□□□□ -0.62
USP4-202ENST00000351842 N4BP2Q86UW6 1770 aaPredicted RBP11.18□□□□□ -0.62
USP4-202ENST00000351842 SLX4Q8IY92 1834 aa11.18□□□□□ -0.62
USP4-202ENST00000351842 SEC24BO95487 1268 aa11.18□□□□□ -0.62
USP4-202ENST00000351842 SCNN1DP51172 638 aa11.18□□□□□ -0.62
USP4-202ENST00000351842 RBM26Q5T8P6 1007 aaKnown RBP11.18□□□□□ -0.62
USP4-202ENST00000351842 PI4K2BQ8TCG2 481 aa11.18□□□□□ -0.62
USP4-202ENST00000351842 ZNF526Q8TF50 670 aaPredicted RBP11.18□□□□□ -0.62
USP4-202ENST00000351842 DIAPH3Q9NSV4 1193 aa11.18□□□□□ -0.62
USP4-202ENST00000351842 RBM5P52756 815 aaKnown RBP eCLIP11.18□□□□□ -0.62
USP4-202ENST00000351842 KIAA0825Q8IV33 1275 aa11.18□□□□□ -0.62
USP4-202ENST00000351842 SP8Q8IXZ3 490 aa11.18□□□□□ -0.62
USP4-202ENST00000351842 FAM227BQ96M60 508 aa11.18□□□□□ -0.62
USP4-202ENST00000351842 PAG1Q9NWQ8 432 aa11.18□□□□□ -0.62
USP4-202ENST00000351842 HMG20BQ9P0W2 317 aa11.18□□□□□ -0.62
USP4-202ENST00000351842 ZBTB12Q9Y330 459 aaPredicted RBP11.18□□□□□ -0.62
USP4-202ENST00000351842 CCDC93Q567U6 631 aa11.17□□□□□ -0.62
USP4-202ENST00000351842 STYK1Q6J9G0 422 aa11.17□□□□□ -0.62
USP4-202ENST00000351842 GNL3LQ9NVN8 582 aaKnown RBP11.17□□□□□ -0.62
USP4-202ENST00000351842 PRDX5P30044 214 aa11.17□□□□□ -0.62
USP4-202ENST00000351842 SPATA5Q8NB90 893 aa11.17□□□□□ -0.62
USP4-202ENST00000351842 ANKRD31Q8N7Z5 1873 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 RGL2O15211 777 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 EIF5BO60841 1220 aaKnown RBP11.16□□□□□ -0.62
USP4-202ENST00000351842 UBE4AQ14139 1066 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 DIXDC1Q155Q3 683 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 TAOK3Q9H2K8 898 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 YBX3P16989 372 aaKnown RBP eCLIP11.16□□□□□ -0.62
USP4-202ENST00000351842 TGFB2P61812 414 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 GRIK5Q16478 980 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 SLC9C2Q5TAH2 1124 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 ZNF804AQ7Z570 1209 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 CNTROBQ8N137 903 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 ANO2Q9NQ90 1003 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 CD2APQ9Y5K6 639 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 APPP05067 770 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 CYP2E1P05181 493 aaPredicted RBP11.16□□□□□ -0.62
USP4-202ENST00000351842 MFSD14BQ5SR56 506 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 TTLL5Q6EMB2 1281 aa11.16□□□□□ -0.62
USP4-202ENST00000351842 PIH1D3Q9NQM4 214 aaKnown RBP11.16□□□□□ -0.62
USP4-202ENST00000351842 ZNF609O15014 1411 aa11.15□□□□□ -0.62
USP4-202ENST00000351842 C10orf71Q711Q0 1435 aa11.15□□□□□ -0.62
USP4-202ENST00000351842 KLRG2A4D1S0 409 aaPredicted RBP11.15□□□□□ -0.62
USP4-202ENST00000351842 FGFR2P21802 821 aa11.15□□□□□ -0.62
USP4-202ENST00000351842 ATP2B4P23634 1241 aa11.15□□□□□ -0.62
USP4-202ENST00000351842 MAGEB6Q8N7X4 407 aa11.15□□□□□ -0.62
USP4-202ENST00000351842 CD209Q9NNX6 404 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms