RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 MYO5AQ9Y4I1 1855 aaKnown RBP16.08■□□□□ 0.16
HMGB1-202ENST00000339872 TNS1Q9HBL0 1735 aaKnown RBP16.08■□□□□ 0.16
HMGB1-202ENST00000339872 UQCRFS1P1P0C7P4 283 aa16.08■□□□□ 0.16
HMGB1-202ENST00000339872 LRRFIP1Q32MZ4 808 aaKnown RBP16.08■□□□□ 0.16
HMGB1-202ENST00000339872 CREB3L3Q68CJ9 461 aa16.08■□□□□ 0.16
HMGB1-202ENST00000339872 CNBD1Q8NA66 436 aa16.08■□□□□ 0.16
HMGB1-202ENST00000339872 BSDC1Q9NW68 430 aaPredicted RBP16.08■□□□□ 0.16
HMGB1-202ENST00000339872 CHMP5Q9NZZ3 219 aa16.08■□□□□ 0.16
HMGB1-202ENST00000339872 ZKSCAN1P17029 563 aaPredicted RBP16.07■□□□□ 0.16
HMGB1-202ENST00000339872 PLSCR1O15162 318 aa16.07■□□□□ 0.16
HMGB1-202ENST00000339872 MCM2P49736 904 aa16.07■□□□□ 0.16
HMGB1-202ENST00000339872 NFKBIBQ15653 356 aa16.07■□□□□ 0.16
HMGB1-202ENST00000339872 NOL8Q76FK4 1167 aaKnown RBP16.07■□□□□ 0.16
HMGB1-202ENST00000339872 KCNB2Q92953 911 aa16.07■□□□□ 0.16
HMGB1-202ENST00000339872 MAST3O60307 1309 aa16.06■□□□□ 0.16
HMGB1-202ENST00000339872 SLC27A2O14975 620 aa16.06■□□□□ 0.16
HMGB1-202ENST00000339872 CASTP20810 708 aaKnown RBP16.06■□□□□ 0.16
HMGB1-202ENST00000339872 HMGB2P26583 209 aaKnown RBP16.06■□□□□ 0.16
HMGB1-202ENST00000339872 DDIT3P35638 169 aa16.06■□□□□ 0.16
HMGB1-202ENST00000339872 RNF20Q5VTR2 975 aa16.06■□□□□ 0.16
HMGB1-202ENST00000339872 CYP2E1P05181 493 aaPredicted RBP16.06■□□□□ 0.16
HMGB1-202ENST00000339872 ADCK5Q3MIX3 580 aa16.06■□□□□ 0.16
HMGB1-202ENST00000339872 JAKMIP1Q96N16 626 aaKnown RBP16.06■□□□□ 0.16
HMGB1-202ENST00000339872 RGS17Q9UGC6 210 aaPredicted RBP16.06■□□□□ 0.16
HMGB1-202ENST00000339872 ZFYP08048 801 aaPredicted RBP16.05■□□□□ 0.16
HMGB1-202ENST00000339872 RPS8P62241 208 aaKnown RBP16.05■□□□□ 0.16
HMGB1-202ENST00000339872 TTF1Q15361 905 aaPredicted RBP16.05■□□□□ 0.16
HMGB1-202ENST00000339872 MINPP1Q9UNW1 487 aa16.05■□□□□ 0.16
HMGB1-202ENST00000339872 M0R2C6 588 aa16.05■□□□□ 0.16
HMGB1-202ENST00000339872 ZNF827Q17R98 1081 aa16.05■□□□□ 0.16
HMGB1-202ENST00000339872 WASHC4Q2M389 1173 aa16.05■□□□□ 0.16
HMGB1-202ENST00000339872 PRR5LQ6MZQ0 368 aa16.05■□□□□ 0.16
HMGB1-202ENST00000339872 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.05■□□□□ 0.16
HMGB1-202ENST00000339872 TFCP2L1Q9NZI6 479 aa16.05■□□□□ 0.16
HMGB1-202ENST00000339872 HMG20BQ9P0W2 317 aa16.05■□□□□ 0.16
HMGB1-202ENST00000339872 DOCK2Q92608 1830 aa16.04■□□□□ 0.16
HMGB1-202ENST00000339872 RASGRF1Q13972 1273 aa16.04■□□□□ 0.16
HMGB1-202ENST00000339872 POTEAQ6S8J7 498 aa16.04■□□□□ 0.16
HMGB1-202ENST00000339872 IL27Q8NEV9 243 aa16.04■□□□□ 0.16
HMGB1-202ENST00000339872 TMX3Q96JJ7 454 aa16.04■□□□□ 0.16
HMGB1-202ENST00000339872 PIH1D3Q9NQM4 214 aaKnown RBP16.04■□□□□ 0.16
HMGB1-202ENST00000339872 U3KPZ7 1027 aaPredicted RBP16.04■□□□□ 0.16
HMGB1-202ENST00000339872 CPA1P15085 419 aa16.03■□□□□ 0.16
HMGB1-202ENST00000339872 BCAMP50895 628 aa16.03■□□□□ 0.16
HMGB1-202ENST00000339872 SPATA5Q8NB90 893 aa16.03■□□□□ 0.16
HMGB1-202ENST00000339872 OSBP2Q969R2 916 aa16.03■□□□□ 0.16
HMGB1-202ENST00000339872 IDH1O75874 414 aaKnown RBP16.03■□□□□ 0.16
HMGB1-202ENST00000339872 SERPINB2P05120 415 aa16.03■□□□□ 0.16
HMGB1-202ENST00000339872 TM4SF1P30408 202 aa16.03■□□□□ 0.16
HMGB1-202ENST00000339872 VPS53Q5VIR6 699 aa16.03■□□□□ 0.16
HMGB1-202ENST00000339872 TTC14Q96N46 770 aa16.03■□□□□ 0.16
HMGB1-202ENST00000339872 TM6SF1Q9BZW5 370 aa16.03■□□□□ 0.16
HMGB1-202ENST00000339872 CIZ1Q9ULV3 898 aaPredicted RBP16.03■□□□□ 0.16
HMGB1-202ENST00000339872 RGPD3A6NKT7 1758 aaPredicted RBP16.03■□□□□ 0.16
HMGB1-202ENST00000339872 RGPD4Q7Z3J3 1758 aa16.03■□□□□ 0.16
HMGB1-202ENST00000339872 RPAP1Q9BWH6 1393 aaPredicted RBP16.03■□□□□ 0.16
HMGB1-202ENST00000339872 ST5P78524 1137 aa16.02■□□□□ 0.16
HMGB1-202ENST00000339872 UBE4AQ14139 1066 aa16.02■□□□□ 0.16
HMGB1-202ENST00000339872 ZSCAN25Q6NSZ9 544 aa16.02■□□□□ 0.16
HMGB1-202ENST00000339872 APPBP2Q92624 585 aa16.02■□□□□ 0.16
HMGB1-202ENST00000339872 CYP46A1Q9Y6A2 500 aa16.02■□□□□ 0.16
HMGB1-202ENST00000339872 TAF6LQ9Y6J9 622 aa16.02■□□□□ 0.16
HMGB1-202ENST00000339872 FRAT2O75474 233 aaPredicted RBP16.02■□□□□ 0.15
HMGB1-202ENST00000339872 AK2P54819 239 aa16.02■□□□□ 0.15
HMGB1-202ENST00000339872 DSCC1Q9BVC3 393 aa16.02■□□□□ 0.15
HMGB1-202ENST00000339872 ZSWIM6Q9HCJ5 1215 aa16.02■□□□□ 0.15
HMGB1-202ENST00000339872 WTIPA6NIX2 430 aaPredicted RBP16.01■□□□□ 0.15
HMGB1-202ENST00000339872 PSMA5P28066 241 aa16.01■□□□□ 0.15
HMGB1-202ENST00000339872 SLC9C2Q5TAH2 1124 aa16.01■□□□□ 0.15
HMGB1-202ENST00000339872 AKT1S1Q96B36 256 aa16.01■□□□□ 0.15
HMGB1-202ENST00000339872 HSPD1P10809 573 aaKnown RBP16.01■□□□□ 0.15
HMGB1-202ENST00000339872 ADD2P35612 726 aa16.01■□□□□ 0.15
HMGB1-202ENST00000339872 GYG1P46976 350 aa16.01■□□□□ 0.15
HMGB1-202ENST00000339872 DDR1Q08345 913 aa16.01■□□□□ 0.15
HMGB1-202ENST00000339872 RUFY3Q7L099 469 aa16.01■□□□□ 0.15
HMGB1-202ENST00000339872 ZGPATQ8N5A5 531 aaKnown RBP16.01■□□□□ 0.15
HMGB1-202ENST00000339872 PDRG1Q9NUG6 133 aa16.01■□□□□ 0.15
HMGB1-202ENST00000339872 PUS7LQ9H0K6 701 aaKnown RBP16■□□□□ 0.15
HMGB1-202ENST00000339872 MYH13Q9UKX3 1938 aa16■□□□□ 0.15
HMGB1-202ENST00000339872 POLRMTO00411 1230 aaKnown RBP16■□□□□ 0.15
HMGB1-202ENST00000339872 CYP21A2P08686 494 aa16■□□□□ 0.15
HMGB1-202ENST00000339872 TSGA10IPQ3SY00 556 aa16■□□□□ 0.15
HMGB1-202ENST00000339872 ANKRD2Q9GZV1 360 aa16■□□□□ 0.15
HMGB1-202ENST00000339872 WWC3Q9ULE0 1092 aa16■□□□□ 0.15
HMGB1-202ENST00000339872 IQSEC3Q9UPP2 1182 aaPredicted RBP16■□□□□ 0.15
HMGB1-202ENST00000339872 ZNF804BA4D1E1 1349 aa15.99■□□□□ 0.15
HMGB1-202ENST00000339872 PDE6AP16499 860 aa15.99■□□□□ 0.15
HMGB1-202ENST00000339872 GRAPQ13588 217 aa15.99■□□□□ 0.15
HMGB1-202ENST00000339872 KRT32Q14532 448 aa15.99■□□□□ 0.15
HMGB1-202ENST00000339872 CAVIN4Q5BKX8 364 aa15.99■□□□□ 0.15
HMGB1-202ENST00000339872 BLOC1S2Q6QNY1 142 aa15.99■□□□□ 0.15
HMGB1-202ENST00000339872 COL23A1Q86Y22 540 aaPredicted RBP15.99■□□□□ 0.15
HMGB1-202ENST00000339872 GRAPLQ8TC17 118 aaPredicted RBP15.99■□□□□ 0.15
HMGB1-202ENST00000339872 FBXO41Q8TF61 875 aa15.99■□□□□ 0.15
HMGB1-202ENST00000339872 RPGRQ92834 1020 aaKnown RBP15.99■□□□□ 0.15
HMGB1-202ENST00000339872 LAMA4Q16363 1823 aa15.99■□□□□ 0.15
HMGB1-202ENST00000339872 CUL4AQ13619 759 aa15.99■□□□□ 0.15
HMGB1-202ENST00000339872 VPS37DQ86XT2 251 aa15.99■□□□□ 0.15
HMGB1-202ENST00000339872 LARP6Q9BRS8 491 aaKnown RBP15.99■□□□□ 0.15
HMGB1-202ENST00000339872 GNL3LQ9NVN8 582 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms