RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 CPA1P15085 419 aa22.18■■□□□ 1.14
USP39-201ENST00000323701 BCAMP50895 628 aa22.18■■□□□ 1.14
USP39-201ENST00000323701 MCMDC2Q4G0Z9 681 aa22.18■■□□□ 1.14
USP39-201ENST00000323701 AKT1S1Q96B36 256 aa22.18■■□□□ 1.14
USP39-201ENST00000323701 SLC5A1P13866 664 aa22.17■■□□□ 1.14
USP39-201ENST00000323701 ARID4AP29374 1257 aaPredicted RBP22.17■■□□□ 1.14
USP39-201ENST00000323701 DDIT3P35638 169 aa22.17■■□□□ 1.14
USP39-201ENST00000323701 DDR1Q08345 913 aa22.17■■□□□ 1.14
USP39-201ENST00000323701 ZMYM1Q5SVZ6 1142 aa22.17■■□□□ 1.14
USP39-201ENST00000323701 CNBD1Q8NA66 436 aa22.17■■□□□ 1.14
USP39-201ENST00000323701 ZNF512BQ96KM6 892 aaPredicted RBP22.17■■□□□ 1.14
USP39-201ENST00000323701 GOLGB1Q14789 3259 aaKnown RBP22.17■■□□□ 1.14
USP39-201ENST00000323701 A0A1B0GUL6 1792 aa22.17■■□□□ 1.14
USP39-201ENST00000323701 NPHP1O15259 732 aa22.16■■□□□ 1.14
USP39-201ENST00000323701 RNF113AO15541 343 aaKnown RBP22.16■■□□□ 1.14
USP39-201ENST00000323701 VPS53Q5VIR6 699 aa22.16■■□□□ 1.14
USP39-201ENST00000323701 KCNB2Q92953 911 aa22.16■■□□□ 1.14
USP39-201ENST00000323701 TFCP2L1Q9NZI6 479 aa22.16■■□□□ 1.14
USP39-201ENST00000323701 MYO5AQ9Y4I1 1855 aaKnown RBP22.16■■□□□ 1.14
USP39-201ENST00000323701 ST18O60284 1047 aa22.16■■□□□ 1.14
USP39-201ENST00000323701 RPS8P62241 208 aaKnown RBP22.16■■□□□ 1.14
USP39-201ENST00000323701 CREB3L3Q68CJ9 461 aa22.16■■□□□ 1.14
USP39-201ENST00000323701 OSBP2Q969R2 916 aa22.16■■□□□ 1.14
USP39-201ENST00000323701 PIH1D3Q9NQM4 214 aaKnown RBP22.16■■□□□ 1.14
USP39-201ENST00000323701 HMG20BQ9P0W2 317 aa22.16■■□□□ 1.14
USP39-201ENST00000323701 TNS1Q9HBL0 1735 aaKnown RBP22.15■■□□□ 1.14
USP39-201ENST00000323701 RASGRF1Q13972 1273 aa22.15■■□□□ 1.14
USP39-201ENST00000323701 FBXO41Q8TF61 875 aa22.15■■□□□ 1.14
USP39-201ENST00000323701 MAST3O60307 1309 aa22.15■■□□□ 1.14
USP39-201ENST00000323701 M0R2C6 588 aa22.15■■□□□ 1.14
USP39-201ENST00000323701 COL23A1Q86Y22 540 aaPredicted RBP22.15■■□□□ 1.14
USP39-201ENST00000323701 SLC27A2O14975 620 aa22.14■■□□□ 1.13
USP39-201ENST00000323701 SERPINB2P05120 415 aa22.14■■□□□ 1.13
USP39-201ENST00000323701 NOL8Q76FK4 1167 aaKnown RBP22.14■■□□□ 1.13
USP39-201ENST00000323701 KLRK1P26718 216 aa22.13■■□□□ 1.13
USP39-201ENST00000323701 DEKP35659 375 aaKnown RBP22.13■■□□□ 1.13
USP39-201ENST00000323701 KCNJ4P48050 445 aa22.13■■□□□ 1.13
USP39-201ENST00000323701 HELLSQ9NRZ9 838 aa22.13■■□□□ 1.13
USP39-201ENST00000323701 POLRMTO00411 1230 aaKnown RBP22.12■■□□□ 1.13
USP39-201ENST00000323701 IQSEC3Q9UPP2 1182 aaPredicted RBP22.12■■□□□ 1.13
USP39-201ENST00000323701 GYG1P46976 350 aa22.12■■□□□ 1.13
USP39-201ENST00000323701 PUS7LQ9H0K6 701 aaKnown RBP22.12■■□□□ 1.13
USP39-201ENST00000323701 A0A0G2JLW4 131 aa22.11■■□□□ 1.13
USP39-201ENST00000323701 CASTP20810 708 aaKnown RBP22.11■■□□□ 1.13
USP39-201ENST00000323701 SPATA5Q8NB90 893 aa22.11■■□□□ 1.13
USP39-201ENST00000323701 TTC14Q96N46 770 aa22.11■■□□□ 1.13
USP39-201ENST00000323701 LARP6Q9BRS8 491 aaKnown RBP22.11■■□□□ 1.13
USP39-201ENST00000323701 FOXP2O15409 715 aa22.11■■□□□ 1.13
USP39-201ENST00000323701 UQCRFS1P1P0C7P4 283 aa22.11■■□□□ 1.13
USP39-201ENST00000323701 JAKMIP1Q96N16 626 aaKnown RBP22.11■■□□□ 1.13
USP39-201ENST00000323701 HSP90AA1P07900 732 aaKnown RBP22.1■■□□□ 1.13
USP39-201ENST00000323701 NFKBIBQ15653 356 aa22.1■■□□□ 1.13
USP39-201ENST00000323701 TMX3Q96JJ7 454 aa22.1■■□□□ 1.13
USP39-201ENST00000323701 WASHC4Q2M389 1173 aa22.09■■□□□ 1.13
USP39-201ENST00000323701 ZGPATQ8N5A5 531 aaKnown RBP22.09■■□□□ 1.13
USP39-201ENST00000323701 WWC3Q9ULE0 1092 aa22.09■■□□□ 1.13
USP39-201ENST00000323701 IDH1O75874 414 aaKnown RBP22.09■■□□□ 1.13
USP39-201ENST00000323701 TICAM2Q86XR7 235 aa22.09■■□□□ 1.13
USP39-201ENST00000323701 MYH7P12883 1935 aa22.08■■□□□ 1.13
USP39-201ENST00000323701 HSPD1P10809 573 aaKnown RBP22.08■■□□□ 1.13
USP39-201ENST00000323701 UBE4AQ14139 1066 aa22.08■■□□□ 1.13
USP39-201ENST00000323701 SLC9C2Q5TAH2 1124 aa22.08■■□□□ 1.13
USP39-201ENST00000323701 PNPLA7Q6ZV29 1317 aa22.08■■□□□ 1.12
USP39-201ENST00000323701 ZSWIM6Q9HCJ5 1215 aa22.08■■□□□ 1.12
USP39-201ENST00000323701 RPAP1Q9BWH6 1393 aaPredicted RBP22.07■■□□□ 1.12
USP39-201ENST00000323701 COL1A1P02452 1464 aaPredicted RBP22.07■■□□□ 1.12
USP39-201ENST00000323701 ZNF804BA4D1E1 1349 aa22.07■■□□□ 1.12
USP39-201ENST00000323701 FRAT2O75474 233 aaPredicted RBP22.07■■□□□ 1.12
USP39-201ENST00000323701 CYP21A2P08686 494 aa22.07■■□□□ 1.12
USP39-201ENST00000323701 ADD2P35612 726 aa22.07■■□□□ 1.12
USP39-201ENST00000323701 EN1Q05925 392 aaPredicted RBP22.07■■□□□ 1.12
USP39-201ENST00000323701 EZH2Q15910 746 aaKnown RBP22.07■■□□□ 1.12
USP39-201ENST00000323701 CRY2Q49AN0 593 aa22.07■■□□□ 1.12
USP39-201ENST00000323701 FAM84BQ96KN1 310 aaPredicted RBP22.07■■□□□ 1.12
USP39-201ENST00000323701 ANO8Q9HCE9 1232 aaPredicted RBP22.07■■□□□ 1.12
USP39-201ENST00000323701 ZKSCAN1P17029 563 aaPredicted RBP22.06■■□□□ 1.12
USP39-201ENST00000323701 AK2P54819 239 aa22.06■■□□□ 1.12
USP39-201ENST00000323701 CHMP5Q9NZZ3 219 aa22.06■■□□□ 1.12
USP39-201ENST00000323701 TCRBV5S4A2TA0A5A2 114 aa22.06■■□□□ 1.12
USP39-201ENST00000323701 ZFYP08048 801 aaPredicted RBP22.06■■□□□ 1.12
USP39-201ENST00000323701 GRAPQ13588 217 aa22.06■■□□□ 1.12
USP39-201ENST00000323701 RUFY3Q7L099 469 aa22.06■■□□□ 1.12
USP39-201ENST00000323701 TXNRD3Q86VQ6 643 aa22.06■■□□□ 1.12
USP39-201ENST00000323701 GRAPLQ8TC17 118 aaPredicted RBP22.06■■□□□ 1.12
USP39-201ENST00000323701 APPBP2Q92624 585 aa22.06■■□□□ 1.12
USP39-201ENST00000323701 PDE6AP16499 860 aa22.05■■□□□ 1.12
USP39-201ENST00000323701 TTF1Q15361 905 aaPredicted RBP22.05■■□□□ 1.12
USP39-201ENST00000323701 TTLL5Q6EMB2 1281 aa22.05■■□□□ 1.12
USP39-201ENST00000323701 TCEANC2Q96MN5 208 aa22.05■■□□□ 1.12
USP39-201ENST00000323701 TM6SF1Q9BZW5 370 aa22.05■■□□□ 1.12
USP39-201ENST00000323701 ZNF532Q9HCE3 1301 aa22.05■■□□□ 1.12
USP39-201ENST00000323701 ST5P78524 1137 aa22.05■■□□□ 1.12
USP39-201ENST00000323701 DSCC1Q9BVC3 393 aa22.05■■□□□ 1.12
USP39-201ENST00000323701 U3KPZ7 1027 aaPredicted RBP22.05■■□□□ 1.12
USP39-201ENST00000323701 TSGA10IPQ3SY00 556 aa22.04■■□□□ 1.12
USP39-201ENST00000323701 MSL1Q68DK7 614 aa22.04■■□□□ 1.12
USP39-201ENST00000323701 STOX1Q6ZVD7 989 aa22.04■■□□□ 1.12
USP39-201ENST00000323701 CAMKK2Q96RR4 588 aa22.04■■□□□ 1.12
USP39-201ENST00000323701 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.04■■□□□ 1.121e-6■■■□□ 14.8
USP39-201ENST00000323701 GPAA1O43292 621 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms