RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 C8orf76Q96K31 380 aa12.27□□□□□ -0.45
COL3A1-202ENST00000317840 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.27□□□□□ -0.45
COL3A1-202ENST00000317840 TRDNQ13061 729 aa12.27□□□□□ -0.45
COL3A1-202ENST00000317840 CHMP4CQ96CF2 233 aa12.27□□□□□ -0.45
COL3A1-202ENST00000317840 CEP126Q9P2H0 1117 aa12.27□□□□□ -0.45
COL3A1-202ENST00000317840 DIP2AQ14689 1571 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 SMTNL1A8MU46 457 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 HSP90AB3PQ58FF7 597 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 C11orf57Q6ZUT1 292 aaPredicted RBP12.26□□□□□ -0.45
COL3A1-202ENST00000317840 KBTBD3Q8NAB2 608 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 PAXBP1Q9Y5B6 917 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 LMTK3Q96Q04 1460 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 TTLL7Q6ZT98 887 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 TDRD7Q8NHU6 1098 aaKnown RBP12.26□□□□□ -0.45
COL3A1-202ENST00000317840 PTPN12Q05209 780 aaKnown RBP12.26□□□□□ -0.45
COL3A1-202ENST00000317840 RESTQ13127 1097 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 ATP2B3Q16720 1220 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 CCDC158Q5M9N0 1113 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 TTC39AQ5SRH9 613 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 DNAJC10Q8IXB1 793 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 COPRSQ9NQ92 184 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 ANKARQ7Z5J8 1434 aa12.26□□□□□ -0.45
COL3A1-202ENST00000317840 GOLGA8BA8MQT2 603 aa12.25□□□□□ -0.45
COL3A1-202ENST00000317840 DHX16O60231 1041 aaKnown RBP12.25□□□□□ -0.45
COL3A1-202ENST00000317840 NAA30Q147X3 362 aaPredicted RBP12.25□□□□□ -0.45
COL3A1-202ENST00000317840 LRRFIP1Q32MZ4 808 aaKnown RBP12.25□□□□□ -0.45
COL3A1-202ENST00000317840 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.25□□□□□ -0.45
COL3A1-202ENST00000317840 FAM89AQ96GI7 184 aa12.25□□□□□ -0.45
COL3A1-202ENST00000317840 ZNF594Q96JF6 807 aaPredicted RBP12.25□□□□□ -0.45
COL3A1-202ENST00000317840 TRMT112Q9UI30 125 aaKnown RBP12.25□□□□□ -0.45
COL3A1-202ENST00000317840 TTLL5Q6EMB2 1281 aa12.25□□□□□ -0.45
COL3A1-202ENST00000317840 KIF18AQ8NI77 898 aa12.25□□□□□ -0.45
COL3A1-202ENST00000317840 ORC3Q9UBD5 711 aaPredicted RBP12.25□□□□□ -0.45
COL3A1-202ENST00000317840 KIF13AQ9H1H9 1805 aa12.25□□□□□ -0.45
COL3A1-202ENST00000317840 FAM160A1Q05DH4 1040 aa12.25□□□□□ -0.45
COL3A1-202ENST00000317840 CCDC144BQ3MJ40 725 aa12.25□□□□□ -0.45
COL3A1-202ENST00000317840 TMC6Q7Z403 805 aa12.25□□□□□ -0.45
COL3A1-202ENST00000317840 CCDC144CPQ8IYA2 1237 aa12.25□□□□□ -0.45
COL3A1-202ENST00000317840 MRPS27Q92552 414 aaKnown RBP12.25□□□□□ -0.45
COL3A1-202ENST00000317840 KCNB2Q92953 911 aa12.25□□□□□ -0.45
COL3A1-202ENST00000317840 AKAP12Q02952 1782 aa12.25□□□□□ -0.45
COL3A1-202ENST00000317840 SFPQP23246 707 aaKnown RBP eCLIP12.24□□□□□ -0.45
COL3A1-202ENST00000317840 IMMTQ16891 758 aaKnown RBP12.24□□□□□ -0.45
COL3A1-202ENST00000317840 CWC25Q9NXE8 425 aaPredicted RBP12.24□□□□□ -0.45
COL3A1-202ENST00000317840 NSUN7Q8NE18 718 aaKnown RBP12.24□□□□□ -0.45
COL3A1-202ENST00000317840 ASAP1Q9ULH1 1129 aa12.24□□□□□ -0.45
COL3A1-202ENST00000317840 KLF18A0A0U1RQI7 1052 aa12.24□□□□□ -0.45
COL3A1-202ENST00000317840 SLC3A2P08195 630 aaKnown RBP12.24□□□□□ -0.45
COL3A1-202ENST00000317840 KCNQ4P56696 695 aa12.24□□□□□ -0.45
COL3A1-202ENST00000317840 CPLX2Q6PUV4 134 aaKnown RBP12.24□□□□□ -0.45
COL3A1-202ENST00000317840 NFXL1Q6ZNB6 911 aa12.24□□□□□ -0.45
COL3A1-202ENST00000317840 FAM177A1Q8N128 213 aaPredicted RBP12.24□□□□□ -0.45
COL3A1-202ENST00000317840 NEMFO60524 1076 aa12.23□□□□□ -0.45
COL3A1-202ENST00000317840 GTF2F1P35269 517 aaKnown RBP eCLIP12.23□□□□□ -0.45
COL3A1-202ENST00000317840 FAM182BQ5T319 152 aa12.23□□□□□ -0.45
COL3A1-202ENST00000317840 LRRC8AQ8IWT6 810 aa12.23□□□□□ -0.45
COL3A1-202ENST00000317840 HAUS7Q99871 368 aa12.23□□□□□ -0.45
COL3A1-202ENST00000317840 SPATA31A3Q5VYP0 1347 aa12.23□□□□□ -0.45
COL3A1-202ENST00000317840 SERPINC1P01008 464 aa12.23□□□□□ -0.45
COL3A1-202ENST00000317840 MARCKSP29966 332 aaPredicted RBP12.23□□□□□ -0.45
COL3A1-202ENST00000317840 CTNNA3Q9UI47 895 aa12.23□□□□□ -0.45
COL3A1-202ENST00000317840 E7EWF7 191 aa12.23□□□□□ -0.45
COL3A1-202ENST00000317840 PFKFB2O60825 505 aa12.23□□□□□ -0.45
COL3A1-202ENST00000317840 LMOD1P29536 600 aaPredicted RBP12.23□□□□□ -0.45
COL3A1-202ENST00000317840 LLPHQ9BRT6 129 aaKnown RBP12.23□□□□□ -0.45
COL3A1-202ENST00000317840 CGNQ9P2M7 1197 aaKnown RBP12.23□□□□□ -0.45
COL3A1-202ENST00000317840 C1orf167Q5SNV9 1468 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 ATP2B1P20020 1258 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 DDB1Q16531 1140 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 NAA16Q6N069 864 aaPredicted RBP12.22□□□□□ -0.45
COL3A1-202ENST00000317840 HELBQ8NG08 1087 aaPredicted RBP12.22□□□□□ -0.45
COL3A1-202ENST00000317840 MED23Q9ULK4 1368 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 TRIM29Q14134 588 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 METTL24Q5JXM2 366 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 STOX1Q6ZVD7 989 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 PLA2G4DQ86XP0 818 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 GPHNQ9NQX3 736 aaPredicted RBP12.22□□□□□ -0.45
COL3A1-202ENST00000317840 IFNKQ9P0W0 207 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 FER1L4A9Z1Z3 1794 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 PCDH11XQ9BZA7 1347 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 PCDH11YQ9BZA8 1340 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 A0A1B0GUL7 405 aa12.22□□□□□ -0.45
COL3A1-202ENST00000317840 HSPD1P10809 573 aaKnown RBP12.22□□□□□ -0.45
COL3A1-202ENST00000317840 PDIA6Q15084 440 aa12.21□□□□□ -0.45
COL3A1-202ENST00000317840 CFAP100Q494V2 611 aa12.21□□□□□ -0.45
COL3A1-202ENST00000317840 VPS37DQ86XT2 251 aa12.21□□□□□ -0.45
COL3A1-202ENST00000317840 SPTLC2O15270 562 aa12.21□□□□□ -0.45
COL3A1-202ENST00000317840 RNF113AO15541 343 aaKnown RBP12.21□□□□□ -0.45
COL3A1-202ENST00000317840 RXRAP19793 462 aa12.21□□□□□ -0.45
COL3A1-202ENST00000317840 IL15P40933 162 aaPredicted RBP12.21□□□□□ -0.45
COL3A1-202ENST00000317840 SNW1Q13573 536 aaKnown RBP12.21□□□□□ -0.45
COL3A1-202ENST00000317840 HSP90AA4PQ58FG1 418 aa12.21□□□□□ -0.45
COL3A1-202ENST00000317840 PDILTQ8N807 584 aa12.21□□□□□ -0.45
COL3A1-202ENST00000317840 GOLPH3LQ9H4A5 285 aa12.21□□□□□ -0.45
COL3A1-202ENST00000317840 RCOR1Q9UKL0 485 aa12.21□□□□□ -0.45
COL3A1-202ENST00000317840 ZNF215Q9UL58 517 aaPredicted RBP12.21□□□□□ -0.45
COL3A1-202ENST00000317840 SETD1AO15047 1707 aaKnown RBP12.21□□□□□ -0.46
COL3A1-202ENST00000317840 PRC1O43663 620 aa12.21□□□□□ -0.46
COL3A1-202ENST00000317840 CDK11BP21127 795 aaKnown RBP12.21□□□□□ -0.46
COL3A1-202ENST00000317840 ATP6V1AP38606 617 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms