RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 VCXQ9H320 206 aa9.87□□□□□ -0.83
USF3-201ENST00000316407 ODF2LQ9ULJ1 636 aa9.87□□□□□ -0.83
USF3-201ENST00000316407 F13A1P00488 732 aa9.87□□□□□ -0.83
USF3-201ENST00000316407 BMP2KLQ5H9B9 411 aa9.87□□□□□ -0.83
USF3-201ENST00000316407 ZNF354CQ86Y25 554 aa9.87□□□□□ -0.83
USF3-201ENST00000316407 E2F4Q16254 413 aa9.87□□□□□ -0.83
USF3-201ENST00000316407 CEP126Q9P2H0 1117 aa9.87□□□□□ -0.83
USF3-201ENST00000316407 NCOA2Q15596 1464 aa9.87□□□□□ -0.83
USF3-201ENST00000316407 BICDL2A1A5D9 508 aa9.87□□□□□ -0.83
USF3-201ENST00000316407 ARHGAP25P42331 645 aa9.87□□□□□ -0.83
USF3-201ENST00000316407 RAB34Q9BZG1 259 aa9.87□□□□□ -0.83
USF3-201ENST00000316407 ORC3Q9UBD5 711 aaPredicted RBP9.87□□□□□ -0.83
USF3-201ENST00000316407 SMIM24O75264 130 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 PLVAPQ9BX97 442 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 ERO1AQ96HE7 468 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 BCL2L12Q9HB09 334 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 CATIPQ7Z7H3 387 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 HMGB1P09429 215 aaKnown RBP9.86□□□□□ -0.83
USF3-201ENST00000316407 CCDC62Q6P9F0 684 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 CTNND2Q9UQB3 1225 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 SAMM50Q9Y512 469 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 RPSAP08865 295 aaKnown RBP9.86□□□□□ -0.83
USF3-201ENST00000316407 BICDL1Q6ZP65 573 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 CCDC65Q8IXS2 484 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 BICD1Q96G01 975 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 CCDC77Q9BR77 488 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 VAT1LQ9HCJ6 419 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 C8orf34Q49A92 452 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 PRAM1Q96QH2 718 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 MKNK2Q9HBH9 465 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 AMPD3Q01432 767 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 CFAP70Q5T0N1 1121 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 PABPN1LA6NDY0 278 aaKnown RBP9.86□□□□□ -0.83
USF3-201ENST00000316407 DDX21Q9NR30 783 aaKnown RBP eCLIP9.86□□□□□ -0.83
USF3-201ENST00000316407 GON4LQ3T8J9 2241 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 ZNF213O14771 459 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 SF3B2Q13435 895 aaKnown RBP9.86□□□□□ -0.83
USF3-201ENST00000316407 KCNG4Q8TDN1 519 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 DDX12PQ92771 950 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 CLTAP09496 248 aa9.86□□□□□ -0.83
USF3-201ENST00000316407 IFIT1P09914 478 aaKnown RBP9.85□□□□□ -0.83
USF3-201ENST00000316407 TNIP1Q15025 636 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 TMPOP42166 694 aaKnown RBP9.85□□□□□ -0.83
USF3-201ENST00000316407 NUCB1Q02818 461 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 RAB3GAP1Q15042 981 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 ABTB1Q969K4 478 aaPredicted RBP9.85□□□□□ -0.83
USF3-201ENST00000316407 JPH2Q9BR39 696 aaPredicted RBP9.85□□□□□ -0.83
USF3-201ENST00000316407 SATB1Q01826 763 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 SPATS2LQ9NUQ6 558 aaKnown RBP9.85□□□□□ -0.83
USF3-201ENST00000316407 SSX2IPQ9Y2D8 614 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 ATP6V0A2Q9Y487 856 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 KANK3Q6NY19 840 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 ZSCAN16Q9H4T2 348 aaPredicted RBP9.85□□□□□ -0.83
USF3-201ENST00000316407 VPS41P49754 854 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 CCDC42Q96M95 316 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 MYO10Q9HD67 2058 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 ATP2A1O14983 1001 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 AKNAD1Q5T1N1 836 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 RUFY3Q7L099 469 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 NDC80O14777 642 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 TMED1Q13445 227 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 TTF1Q15361 905 aaPredicted RBP9.85□□□□□ -0.83
USF3-201ENST00000316407 RPAP2Q8IXW5 612 aaPredicted RBP9.85□□□□□ -0.83
USF3-201ENST00000316407 MCM7P33993 719 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 NAPGQ99747 312 aaPredicted RBP9.85□□□□□ -0.83
USF3-201ENST00000316407 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.85□□□□□ -0.83
USF3-201ENST00000316407 MAP7Q14244 749 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 GEN1Q17RS7 908 aa9.85□□□□□ -0.83
USF3-201ENST00000316407 C8orf74Q6P047 294 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 DACT3Q96B18 629 aaPredicted RBP9.84□□□□□ -0.83
USF3-201ENST00000316407 IARSP41252 1262 aaKnown RBP9.84□□□□□ -0.83
USF3-201ENST00000316407 DUSP27Q5VZP5 1158 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 SDCCAG8Q86SQ7 713 aaPredicted RBP9.84□□□□□ -0.83
USF3-201ENST00000316407 CABS1Q96KC9 395 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 KRT83P78385 493 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 PFDN4Q9NQP4 134 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 DTNBO60941 627 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 ASIC1P78348 528 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 CHST3Q7LGC8 479 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 MRPL46Q9H2W6 279 aaKnown RBP9.84□□□□□ -0.83
USF3-201ENST00000316407 MYCNP04198 464 aaPredicted RBP9.84□□□□□ -0.83
USF3-201ENST00000316407 FERMT1Q9BQL6 677 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 ANKIB1Q9P2G1 1089 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 RMND1Q9NWS8 449 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 IQCA1Q86XH1 822 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 RBBP5Q15291 538 aaKnown RBP9.84□□□□□ -0.83
USF3-201ENST00000316407 PLEKHO1Q53GL0 409 aaPredicted RBP9.84□□□□□ -0.83
USF3-201ENST00000316407 HINFPQ9BQA5 517 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 ANKRD50Q9ULJ7 1429 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 TNNC1P63316 161 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 PLIN2Q99541 437 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 TSGA10Q9BZW7 698 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 NUCKS1Q9H1E3 243 aaKnown RBP9.84□□□□□ -0.83
USF3-201ENST00000316407 SMARCA2P51531 1590 aa9.84□□□□□ -0.83
USF3-201ENST00000316407 UTP11Q9Y3A2 253 aaKnown RBP9.83□□□□□ -0.84
USF3-201ENST00000316407 SDSP20132 328 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 STAG1Q8WVM7 1258 aa9.83□□□□□ -0.84
USF3-201ENST00000316407 N4BP2L2Q92802 583 aaPredicted RBP9.83□□□□□ -0.84
USF3-201ENST00000316407 MTRF1LQ9UGC7 380 aaKnown RBP9.83□□□□□ -0.84
USF3-201ENST00000316407 POLD1P28340 1107 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 117.1 ms