RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 RIMS2Q9UQ26 1411 aa7.18□□□□□ -1.26
CKS1B-201ENST00000308987 RPRD2Q5VT52 1461 aaKnown RBP7.17□□□□□ -1.26
CKS1B-201ENST00000308987 SFSWAPQ12872 951 aaKnown RBP7.17□□□□□ -1.26
CKS1B-201ENST00000308987 LENG1Q96BZ8 264 aaPredicted RBP7.17□□□□□ -1.26
CKS1B-201ENST00000308987 MSH6P52701 1360 aa7.17□□□□□ -1.26
CKS1B-201ENST00000308987 JCADQ9P266 1359 aa7.17□□□□□ -1.26
CKS1B-201ENST00000308987 PTPRUQ92729 1446 aa7.17□□□□□ -1.26
CKS1B-201ENST00000308987 TMEM229AB2RXF0 380 aa7.16□□□□□ -1.26
CKS1B-201ENST00000308987 ELNP15502 786 aa7.16□□□□□ -1.26
CKS1B-201ENST00000308987 TXLNAP40222 546 aa7.16□□□□□ -1.26
CKS1B-201ENST00000308987 ADH7P40394 386 aa7.16□□□□□ -1.26
CKS1B-201ENST00000308987 LRRC69Q6ZNQ3 347 aa7.16□□□□□ -1.26
CKS1B-201ENST00000308987 SNRKQ9NRH2 765 aa7.16□□□□□ -1.26
CKS1B-201ENST00000308987 SLC52A1Q9NWF4 448 aa7.16□□□□□ -1.26
CKS1B-201ENST00000308987 ANKRD50Q9ULJ7 1429 aa7.16□□□□□ -1.26
CKS1B-201ENST00000308987 NHSL1Q5SYE7 1610 aa7.16□□□□□ -1.26
CKS1B-201ENST00000308987 IQGAP3Q86VI3 1631 aa7.16□□□□□ -1.26
CKS1B-201ENST00000308987 XRN1Q8IZH2 1706 aaKnown RBP7.15□□□□□ -1.26
CKS1B-201ENST00000308987 A0A0A0MRY4 1105 aa7.15□□□□□ -1.26
CKS1B-201ENST00000308987 APBB1O00213 710 aa7.15□□□□□ -1.26
CKS1B-201ENST00000308987 EIF4G2P78344 907 aaKnown RBP eCLIP7.15□□□□□ -1.26
CKS1B-201ENST00000308987 NRG1Q02297 640 aaPredicted RBP7.15□□□□□ -1.26
CKS1B-201ENST00000308987 SHISA2Q6UWI4 295 aa7.15□□□□□ -1.26
CKS1B-201ENST00000308987 TBX22Q9Y458 520 aa7.15□□□□□ -1.26
CKS1B-201ENST00000308987 SSBP4Q9BWG4 385 aaPredicted RBP7.14□□□□□ -1.27
CKS1B-201ENST00000308987 SPHKAPQ2M3C7 1700 aa7.13□□□□□ -1.27
CKS1B-201ENST00000308987 NALCNQ8IZF0 1738 aa7.13□□□□□ -1.27
CKS1B-201ENST00000308987 NCOA3Q9Y6Q9 1424 aa7.13□□□□□ -1.27
CKS1B-201ENST00000308987 LILRB5O75023 590 aa7.13□□□□□ -1.27
CKS1B-201ENST00000308987 SPEM2Q0P670 501 aa7.13□□□□□ -1.27
CKS1B-201ENST00000308987 ZDHHC1Q8WTX9 485 aa7.13□□□□□ -1.27
CKS1B-201ENST00000308987 C7orf43Q8WVR3 580 aa7.13□□□□□ -1.27
CKS1B-201ENST00000308987 RNF112Q9ULX5 631 aa7.13□□□□□ -1.27
CKS1B-201ENST00000308987 ACIN1Q9UKV3 1341 aaKnown RBP7.12□□□□□ -1.27
CKS1B-201ENST00000308987 CENPBP07199 599 aaPredicted RBP7.12□□□□□ -1.27
CKS1B-201ENST00000308987 FAM50AQ14320 339 aaKnown RBP7.12□□□□□ -1.27
CKS1B-201ENST00000308987 BRINP3Q76B58 766 aa7.12□□□□□ -1.27
CKS1B-201ENST00000308987 RAB44Q7Z6P3 723 aaPredicted RBP7.12□□□□□ -1.27
CKS1B-201ENST00000308987 NEUROD4Q9HD90 331 aa7.12□□□□□ -1.27
CKS1B-201ENST00000308987 TRPM2O94759 1503 aa7.11□□□□□ -1.27
CKS1B-201ENST00000308987 ASXL1Q8IXJ9 1541 aa7.11□□□□□ -1.27
CKS1B-201ENST00000308987 PAX4O43316 350 aa7.11□□□□□ -1.27
CKS1B-201ENST00000308987 RAC1P63000 192 aa7.11□□□□□ -1.27
CKS1B-201ENST00000308987 NEUROD1Q13562 356 aa7.11□□□□□ -1.27
CKS1B-201ENST00000308987 MAP7D1Q3KQU3 841 aa7.11□□□□□ -1.27
CKS1B-201ENST00000308987 L3MBTL2Q969R5 705 aa7.11□□□□□ -1.27
CKS1B-201ENST00000308987 C19orf44Q9H6X5 657 aa7.11□□□□□ -1.27
CKS1B-201ENST00000308987 SETBP1Q9Y6X0 1596 aa7.11□□□□□ -1.27
CKS1B-201ENST00000308987 MST1RQ04912 1400 aa7.1□□□□□ -1.27
CKS1B-201ENST00000308987 PIK3R4Q99570 1358 aa7.1□□□□□ -1.27
CKS1B-201ENST00000308987 SPATA31A6Q5VVP1 1343 aa7.1□□□□□ -1.27
CKS1B-201ENST00000308987 LAMC1P11047 1609 aa7.1□□□□□ -1.27
CKS1B-201ENST00000308987 EML1O00423 815 aa7.1□□□□□ -1.27
CKS1B-201ENST00000308987 COBLO75128 1261 aa7.1□□□□□ -1.27
CKS1B-201ENST00000308987 PPP1R15AO75807 674 aaPredicted RBP7.1□□□□□ -1.27
CKS1B-201ENST00000308987 TXKP42681 527 aa7.1□□□□□ -1.27
CKS1B-201ENST00000308987 DIEXFQ68CQ4 756 aaKnown RBP7.1□□□□□ -1.27
CKS1B-201ENST00000308987 PLPP7Q8NBV4 271 aa7.1□□□□□ -1.27
CKS1B-201ENST00000308987 DDX17Q92841 729 aaKnown RBP7.1□□□□□ -1.27
CKS1B-201ENST00000308987 USP21Q9UK80 565 aa7.1□□□□□ -1.27
CKS1B-201ENST00000308987 AMOTL2Q9Y2J4 779 aa7.1□□□□□ -1.27
CKS1B-201ENST00000308987 SETD5Q9C0A6 1442 aa7.1□□□□□ -1.27
CKS1B-201ENST00000308987 METP08581 1390 aa7.09□□□□□ -1.27
CKS1B-201ENST00000308987 CLTCL1P53675 1640 aa7.09□□□□□ -1.27
CKS1B-201ENST00000308987 NOS2P35228 1153 aa7.09□□□□□ -1.27
CKS1B-201ENST00000308987 TEAD4Q15561 434 aa7.09□□□□□ -1.27
CKS1B-201ENST00000308987 PRM3Q9NNZ6 103 aa7.09□□□□□ -1.27
CKS1B-201ENST00000308987 SCHIP1Q9P0W5 487 aaPredicted RBP7.09□□□□□ -1.27
CKS1B-201ENST00000308987 NEXMIFQ5QGS0 1516 aa7.09□□□□□ -1.27
CKS1B-201ENST00000308987 KIF1BO60333 1816 aa7.08□□□□□ -1.28
CKS1B-201ENST00000308987 AFF2P51816 1311 aa7.08□□□□□ -1.28
CKS1B-201ENST00000308987 CLSPNQ9HAW4 1339 aa7.08□□□□□ -1.28
CKS1B-201ENST00000308987 ATF3P18847 181 aa7.08□□□□□ -1.28
CKS1B-201ENST00000308987 C14orf37Q86TY3 774 aa7.08□□□□□ -1.28
CKS1B-201ENST00000308987 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.08□□□□□ -1.28
CKS1B-201ENST00000308987 KRTAP4-7Q9BYR0 210 aa7.08□□□□□ -1.28
CKS1B-201ENST00000308987 TBC1D2BQ9UPU7 963 aa7.08□□□□□ -1.28
CKS1B-201ENST00000308987 PCDHGA11Q9Y5H2 935 aa7.08□□□□□ -1.28
CKS1B-201ENST00000308987 CDK12Q9NYV4 1490 aaPredicted RBP7.08□□□□□ -1.28
CKS1B-201ENST00000308987 RGS12O14924 1447 aa7.08□□□□□ -1.28
CKS1B-201ENST00000308987 DCCP43146 1447 aa7.08□□□□□ -1.28
CKS1B-201ENST00000308987 ROCK1Q13464 1354 aa7.08□□□□□ -1.28
CKS1B-201ENST00000308987 MARF1Q9Y4F3 1742 aaKnown RBP7.07□□□□□ -1.28
CKS1B-201ENST00000308987 BACH1O14867 736 aa7.07□□□□□ -1.28
CKS1B-201ENST00000308987 YBX3P16989 372 aaKnown RBP eCLIP7.07□□□□□ -1.28
CKS1B-201ENST00000308987 IRF5Q13568 498 aa7.07□□□□□ -1.28
CKS1B-201ENST00000308987 LCE1DQ5T752 114 aa7.07□□□□□ -1.28
CKS1B-201ENST00000308987 MEX3CQ5U5Q3 659 aaKnown RBP7.07□□□□□ -1.28
CKS1B-201ENST00000308987 ZNF772Q68DY9 489 aaPredicted RBP7.07□□□□□ -1.28
CKS1B-201ENST00000308987 DMRTC2Q8IXT2 367 aaPredicted RBP7.07□□□□□ -1.28
CKS1B-201ENST00000308987 FMR1NBQ8N0W7 255 aaPredicted RBP7.07□□□□□ -1.28
CKS1B-201ENST00000308987 NUDT8Q8WV74 236 aa7.07□□□□□ -1.28
CKS1B-201ENST00000308987 FMNL2Q96PY5 1086 aa7.07□□□□□ -1.28
CKS1B-201ENST00000308987 JPH1Q9HDC5 661 aaPredicted RBP7.07□□□□□ -1.28
CKS1B-201ENST00000308987 GPC6Q9Y625 555 aaPredicted RBP7.07□□□□□ -1.28
CKS1B-201ENST00000308987 NUP155O75694 1391 aa7.07□□□□□ -1.28
CKS1B-201ENST00000308987 PNPLA6Q8IY17 1366 aa7.07□□□□□ -1.28
CKS1B-201ENST00000308987 RXRBP28702 533 aa7.06□□□□□ -1.28
CKS1B-201ENST00000308987 WFDC12Q8WWY7 111 aa7.06□□□□□ -1.28
CKS1B-201ENST00000308987 CEP63Q96MT8 703 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms