RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 RP2O75695 350 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 FABP1P07148 127 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 VEGFCP49767 419 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 PSMA6P60900 246 aaKnown RBP8.73□□□□□ -1.01
LIG3-216ENST00000593099 BDH1Q02338 343 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 CDK5R1Q15078 307 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 LHFPL2Q6ZUX7 228 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 PLPP7Q8NBV4 271 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 OR13G1Q8NGZ3 307 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 DEDD2Q8WXF8 326 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 SNAPC3Q92966 411 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 TOMM40LQ969M1 308 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 RAB3CQ96E17 227 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 TRMT61AQ96FX7 289 aaKnown RBP8.73□□□□□ -1.01
LIG3-216ENST00000593099 PPIL3Q9H2H8 161 aaKnown RBP8.73□□□□□ -1.01
LIG3-216ENST00000593099 ZNF552Q9H707 407 aaPredicted RBP8.73□□□□□ -1.01
LIG3-216ENST00000593099 BCO1Q9HAY6 547 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 GNG13Q9P2W3 67 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 KCNMB2Q9Y691 235 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 PCNX2A6NKB5 2137 aa8.73□□□□□ -1.01
LIG3-216ENST00000593099 TMEM8BA6NDV4 472 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 PATE4P0C8F1 98 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 SRMP19623 302 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 GLRA1P23415 457 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 LGALS4P56470 323 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 CLDN12P56749 244 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 RTP5Q14D33 572 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 PLGLAQ15195 96 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 PLEKHN1Q494U1 663 aaPredicted RBP8.72□□□□□ -1.01
LIG3-216ENST00000593099 SYT6Q5T7P8 510 aaPredicted RBP8.72□□□□□ -1.01
LIG3-216ENST00000593099 INO80CQ6PI98 192 aaPredicted RBP8.72□□□□□ -1.01
LIG3-216ENST00000593099 KCTD9Q7L273 389 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 CCDC71LQ8N9Z2 235 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 NPEPL1Q8NDH3 523 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 OR4C5Q8NGB2 326 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 OR51F2Q8NH61 342 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 NDNFQ8TB73 568 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 DPCDQ9BVM2 203 aaPredicted RBP8.72□□□□□ -1.01
LIG3-216ENST00000593099 TAS2R4Q9NYW5 299 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 LRP12Q9Y561 859 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 PCDHGA9Q9Y5G4 932 aaKnown RBP8.72□□□□□ -1.01
LIG3-216ENST00000593099 CHCHD2Q9Y6H1 151 aaPredicted RBP8.72□□□□□ -1.01
LIG3-216ENST00000593099 COL6A6A6NMZ7 2263 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 C1QCP02747 245 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 TK1P04183 234 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 M6PRP20645 277 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 TUBG1P23258 451 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 KLF3P57682 345 aaPredicted RBP8.72□□□□□ -1.01
LIG3-216ENST00000593099 FXYD4P59646 89 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 POU4F3Q15319 338 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 ADPRHL1Q8NDY3 354 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 ZNF385AQ96PM9 386 aaKnown RBP8.72□□□□□ -1.01
LIG3-216ENST00000593099 PIGMQ9H3S5 423 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 SLC52A3Q9NQ40 469 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 ANKRD36A6QL64 1941 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 ZNF736B4DX44 427 aaPredicted RBP8.72□□□□□ -1.01
LIG3-216ENST00000593099 HSPB6O14558 160 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 SCGB2A1O75556 95 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 CNOT4O95628 575 aaKnown RBP8.72□□□□□ -1.01
LIG3-216ENST00000593099 ZP4Q12836 540 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 EDDM3AQ14507 147 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 RNF212Q495C1 297 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 TSPO2Q5TGU0 170 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 RDH10Q8IZV5 341 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 OR8D4Q8NGM9 314 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 SMIM19Q96E16 107 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 MFFQ9GZY8 342 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 ISYNA1Q9NPH2 558 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 STEAP1Q9UHE8 339 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 H3BMQ9 156 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 TXNDC12O95881 172 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 CST2P09228 141 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 COX6B1P14854 86 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 NR4A2P43354 598 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 VAMP3Q15836 100 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 PCK2Q16822 640 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 PCGF3Q3KNV8 242 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 GDPD1Q8N9F7 314 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 FAM3DQ96BQ1 224 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 PLK3Q9H4B4 646 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 ACKR4Q9NPB9 350 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 MRPL15Q9P015 296 aaKnown RBP8.72□□□□□ -1.01
LIG3-216ENST00000593099 CGGBP1Q9UFW8 167 aaPredicted RBP8.72□□□□□ -1.01
LIG3-216ENST00000593099 RAB22AQ9UL26 194 aa8.72□□□□□ -1.01
LIG3-216ENST00000593099 FXYD6-FXYD2A0A087WZ82 144 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 SNRPBP14678 240 aaKnown RBP8.71□□□□□ -1.01
LIG3-216ENST00000593099 AKR1C2P52895 323 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 PPP1CBP62140 327 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 MESTQ5EB52 335 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 OR2T2Q6IF00 324 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 Q6ZTK2 550 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 TSEN54Q7Z6J9 526 aaKnown RBP8.71□□□□□ -1.01
LIG3-216ENST00000593099 PIP4P1Q86T03 277 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 LRRC28Q86X40 367 aaPredicted RBP8.71□□□□□ -1.01
LIG3-216ENST00000593099 PP6455Q8WZ26 134 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 RPL3LQ92901 407 aaKnown RBP8.71□□□□□ -1.01
LIG3-216ENST00000593099 TECTBQ96PL2 329 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 FXYD6Q9H0Q3 95 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 RAB1BQ9H0U4 201 aa8.71□□□□□ -1.01
LIG3-216ENST00000593099 RANBP3Q9H6Z4 567 aaPredicted RBP8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms