RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 MCTS1Q9ULC4 181 aaKnown RBP1.02□□□□□ -2.25
VPS35-207ENST00000568191 IGHV1-69DA0A0B4J2H0 117 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 IGHV1-3A0A0C4DH29 117 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 LOC100506127A0A0U1RQW1 187 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 LOC100653049A0A140TA62 436 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 HEATR9A2RTY3 570 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 ZNF879B4DU55 563 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 SUPT3HB4E1H0 165 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 HSBP1L1C9JCN9 74 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 MFNGO00587 321 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 GABRPO00591 440 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 RNF13O43567 381 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 CDH16O75309 829 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 CLDN11O75508 207 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 OR2J3O76001 311 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 KRT34O76011 436 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 LHBP01229 141 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 SERPINE2P07093 398 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 CRYGCP07315 174 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 PFN1P07737 140 aaKnown RBP1.01□□□□□ -2.25
VPS35-207ENST00000568191 OR8G3PP0DMU2 310 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 NTF3P20783 257 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 PRKACBP22694 351 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 CPN2P22792 545 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 OR1E1P30953 314 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 NUP62P37198 522 aaPredicted RBP1.01□□□□□ -2.25
VPS35-207ENST00000568191 RBM34P42696 430 aaKnown RBP1.01□□□□□ -2.25
VPS35-207ENST00000568191 TAS2R46P59540 309 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 LIPEQ05469 1076 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 TRDNQ13061 729 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 KLHL40Q2TBA0 621 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 ALKBH6Q3KRA9 238 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 Q3ZCU0 254 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 NKAIN1Q4KMZ8 207 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 SPANXN2Q5MJ10 180 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 CCDC122Q5T0U0 273 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 PIP5KL1Q5T9C9 394 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 LIN9Q5TKA1 542 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 LRRC66Q68CR7 880 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 TTC19Q6DKK2 380 aaPredicted RBP1.01□□□□□ -2.25
VPS35-207ENST00000568191 BZW1Q7L1Q6 419 aaKnown RBP1.01□□□□□ -2.25
VPS35-207ENST00000568191 MRPL55Q7Z7F7 128 aaKnown RBP1.01□□□□□ -2.25
VPS35-207ENST00000568191 SPATA24Q86W54 205 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 FAM71AQ8IYT1 594 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 COMMD1Q8N668 190 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 CSGALNACT2Q8N6G5 542 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 SPATA4Q8NEY3 305 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 BPIFCQ8NFQ6 507 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 OR51E1Q8TCB6 317 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 APH1BQ8WW43 257 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.01□□□□□ -2.25
VPS35-207ENST00000568191 TMEM230Q96A57 120 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 MCUR1Q96AQ8 359 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 ISG20Q96AZ6 181 aaKnown RBP1.01□□□□□ -2.25
VPS35-207ENST00000568191 DYNLL2Q96FJ2 89 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 ATP6V1G3Q96LB4 118 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 FAM210AQ96ND0 272 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 CHP1Q99653 195 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 BPIFA3Q9BQP9 254 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 NUP58Q9BVL2 599 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 ANKRD60Q9BZ19 345 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 SLIRPQ9GZT3 109 aaKnown RBP1.01□□□□□ -2.25
VPS35-207ENST00000568191 IQCGQ9H095 443 aaKnown RBP1.01□□□□□ -2.25
VPS35-207ENST00000568191 ZNF442Q9H7R0 627 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 TMEM27Q9HBJ8 222 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 AGPAT3Q9NRZ7 376 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 PEF1Q9UBV8 284 aaKnown RBP1.01□□□□□ -2.25
VPS35-207ENST00000568191 LGALS13Q9UHV8 139 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 FARSAQ9Y285 508 aaKnown RBP1.01□□□□□ -2.25
VPS35-207ENST00000568191 GMEB1Q9Y692 573 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 V9GYY5 206 aaPredicted RBP1.01□□□□□ -2.25
VPS35-207ENST00000568191 SORL1Q92673 2214 aa1.01□□□□□ -2.25
VPS35-207ENST00000568191 BRD4O60885 1362 aaPredicted RBP1□□□□□ -2.25
VPS35-207ENST00000568191 INSRP06213 1382 aa1□□□□□ -2.25
VPS35-207ENST00000568191 NINLQ9Y2I6 1382 aa1□□□□□ -2.25
VPS35-207ENST00000568191 C2orf16Q68DN1 1984 aa1□□□□□ -2.25
VPS35-207ENST00000568191 GOLGA8TH3BQL2 631 aa1□□□□□ -2.25
VPS35-207ENST00000568191 SLC9A3R1O14745 358 aaPredicted RBP1□□□□□ -2.25
VPS35-207ENST00000568191 AIM2O14862 343 aa1□□□□□ -2.25
VPS35-207ENST00000568191 YKT6O15498 198 aa1□□□□□ -2.25
VPS35-207ENST00000568191 CLOCKO15516 846 aa1□□□□□ -2.25
VPS35-207ENST00000568191 RAD51CO43502 376 aa1□□□□□ -2.25
VPS35-207ENST00000568191 SEMA3DO95025 777 aa1□□□□□ -2.25
VPS35-207ENST00000568191 YEATS4O95619 227 aa1□□□□□ -2.25
VPS35-207ENST00000568191 FGFR1OPO95684 399 aaKnown RBP1□□□□□ -2.25
VPS35-207ENST00000568191 CSTAP01040 98 aa1□□□□□ -2.25
VPS35-207ENST00000568191 OXTP01178 125 aa1□□□□□ -2.25
VPS35-207ENST00000568191 KRT14P02533 472 aa1□□□□□ -2.25
VPS35-207ENST00000568191 TROVE2P10155 538 aaKnown RBP eCLIP1□□□□□ -2.25
VPS35-207ENST00000568191 HRES1P13985 223 aa1□□□□□ -2.25
VPS35-207ENST00000568191 PRKACAP17612 351 aa1□□□□□ -2.25
VPS35-207ENST00000568191 TCP1P17987 556 aaKnown RBP1□□□□□ -2.25
VPS35-207ENST00000568191 TNNI1P19237 187 aa1□□□□□ -2.25
VPS35-207ENST00000568191 SRMP19623 302 aa1□□□□□ -2.25
VPS35-207ENST00000568191 MSR1P21757 451 aa1□□□□□ -2.25
VPS35-207ENST00000568191 CDH6P55285 790 aa1□□□□□ -2.25
VPS35-207ENST00000568191 CLDN8P56748 225 aa1□□□□□ -2.25
VPS35-207ENST00000568191 C21orf59P57076 290 aa1□□□□□ -2.25
VPS35-207ENST00000568191 STXBP1P61764 594 aaKnown RBP1□□□□□ -2.25
VPS35-207ENST00000568191 XIAPP98170 497 aa1□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms