RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 RDH10Q8IZV5 341 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 ZNF611Q8N823 705 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 OR14K1Q8NGZ2 314 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 GPR148Q8TDV2 347 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 THRSPQ92748 146 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 C10orf35Q96D05 121 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 FAM71F1Q96KD3 344 aaPredicted RBP17.68■□□□□ 0.42
CLN3-212ENST00000564574 CGGBP1Q9UFW8 167 aaPredicted RBP17.68■□□□□ 0.42
CLN3-212ENST00000564574 DUSP13Q9UII6 198 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 GPR160Q9UJ42 338 aa17.68■□□□□ 0.42
CLN3-212ENST00000564574 FBXO9Q9UK97 447 aaPredicted RBP17.68■□□□□ 0.42
CLN3-212ENST00000564574 CD300LBA8K4G0 201 aa17.67■□□□□ 0.42
CLN3-212ENST00000564574 GP2P55259 537 aaKnown RBP17.67■□□□□ 0.42
CLN3-212ENST00000564574 OR2T2Q6IF00 324 aa17.67■□□□□ 0.42
CLN3-212ENST00000564574 TMEM200AQ86VY9 491 aa17.67■□□□□ 0.42
CLN3-212ENST00000564574 MUC15Q8N387 334 aa17.67■□□□□ 0.42
CLN3-212ENST00000564574 FTMTQ8N4E7 242 aa17.67■□□□□ 0.42
CLN3-212ENST00000564574 SEMA6DQ8NFY4 1073 aa17.67■□□□□ 0.42
CLN3-212ENST00000564574 MARVELD3Q96A59 401 aa17.67■□□□□ 0.42
CLN3-212ENST00000564574 SYT3Q9BQG1 590 aa17.67■□□□□ 0.42
CLN3-212ENST00000564574 SOX7Q9BT81 388 aa17.67■□□□□ 0.42
CLN3-212ENST00000564574 NDUFB11Q9NX14 153 aa17.67■□□□□ 0.42
CLN3-212ENST00000564574 FZR1Q9UM11 496 aa17.67■□□□□ 0.42
CLN3-212ENST00000564574 TIMM8AO60220 97 aaPredicted RBP17.66■□□□□ 0.42
CLN3-212ENST00000564574 SERPINA3P01011 423 aa17.66■□□□□ 0.42
CLN3-212ENST00000564574 GABRA5P31644 462 aa17.66■□□□□ 0.42
CLN3-212ENST00000564574 LIPAP38571 399 aa17.66■□□□□ 0.42
CLN3-212ENST00000564574 RIPPLY1Q0D2K3 151 aa17.66■□□□□ 0.42
CLN3-212ENST00000564574 KRT74Q7RTS7 529 aa17.66■□□□□ 0.42
CLN3-212ENST00000564574 LRP11Q86VZ4 500 aa17.66■□□□□ 0.42
CLN3-212ENST00000564574 OR56B2PQ8NGI1 322 aa17.66■□□□□ 0.42
CLN3-212ENST00000564574 RGP1Q92546 391 aaPredicted RBP17.66■□□□□ 0.42
CLN3-212ENST00000564574 UBTD1Q9HAC8 227 aa17.66■□□□□ 0.42
CLN3-212ENST00000564574 CYSLTR2Q9NS75 346 aa17.66■□□□□ 0.42
CLN3-212ENST00000564574 DHDHQ9UQ10 334 aa17.66■□□□□ 0.42
CLN3-212ENST00000564574 TRBV5-5A0A0J9YX44 114 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 A0A1W2PPW3 197 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 TNK1Q13470 666 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 SSX1Q16384 188 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 Q499Y3 187 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 AGAP6Q5VW22 663 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 C20orf204Q6ZNR8 217 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 OR8G5Q8NG78 346 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 OR13C3Q8NGS6 347 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 OR10AC1Q8NH08 325 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 TSEN15Q8WW01 171 aaKnown RBP17.65■□□□□ 0.42
CLN3-212ENST00000564574 PLEKHF2Q9H8W4 249 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 PLEKHA1Q9HB21 404 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 MRPL15Q9P015 296 aaKnown RBP17.65■□□□□ 0.42
CLN3-212ENST00000564574 TAAR3PQ9P1P4 343 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 ENPP5Q9UJA9 477 aa17.65■□□□□ 0.42
CLN3-212ENST00000564574 SF3B6Q9Y3B4 125 aaKnown RBP17.65■□□□□ 0.42
CLN3-212ENST00000564574 ZNF816-ZNF321PA0A0X1KG74 233 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 TFAP2AP05549 437 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 CD2P06729 351 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 DANCRP0C864 163 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 ACKR3P25106 362 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 ALDH3B2P48448 385 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 RPS11P62280 158 aaKnown RBP eCLIP17.64■□□□□ 0.41
CLN3-212ENST00000564574 SWI5Q1ZZU3 235 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 ZMAT1Q5H9K5 638 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 TMEM255AQ5JRV8 349 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 DTX2Q86UW9 622 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 OR51A4Q8NGJ6 313 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 TMED9Q9BVK6 235 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 SLC22A4Q9H015 551 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 ZNF275Q9NSD4 429 aaPredicted RBP17.64■□□□□ 0.41
CLN3-212ENST00000564574 CBLN4Q9NTU7 201 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 MYEF2Q9P2K5 600 aaKnown RBP17.64■□□□□ 0.41
CLN3-212ENST00000564574 PIGLQ9Y2B2 252 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 NOP16Q9Y3C1 178 aaKnown RBP17.64■□□□□ 0.41
CLN3-212ENST00000564574 ROS1P08922 2347 aa17.64■□□□□ 0.41
CLN3-212ENST00000564574 PLSCR5A0PG75 271 aa17.63■□□□□ 0.41
CLN3-212ENST00000564574 ANKRD30BLA7E2S9 258 aa17.63■□□□□ 0.41
CLN3-212ENST00000564574 CST4P01036 141 aa17.63■□□□□ 0.41
CLN3-212ENST00000564574 HLA-DPB1P04440 258 aa17.63■□□□□ 0.41
CLN3-212ENST00000564574 OCM2P0CE71 109 aa17.63■□□□□ 0.41
CLN3-212ENST00000564574 ZNF20P17024 532 aa17.63■□□□□ 0.41
CLN3-212ENST00000564574 MAPK3P27361 379 aaPredicted RBP17.63■□□□□ 0.41
CLN3-212ENST00000564574 RPL5P46777 297 aaKnown RBP17.63■□□□□ 0.41
CLN3-212ENST00000564574 PRSS12P56730 875 aa17.63■□□□□ 0.41
CLN3-212ENST00000564574 SNRPD2P62316 118 aaKnown RBP17.63■□□□□ 0.41
CLN3-212ENST00000564574 RPS25P62851 125 aaKnown RBP17.63■□□□□ 0.41
CLN3-212ENST00000564574 NKPD1Q17RQ9 610 aa17.63■□□□□ 0.41
CLN3-212ENST00000564574 ALKBH6Q3KRA9 238 aa17.63■□□□□ 0.41
CLN3-212ENST00000564574 OR5AS1Q8N127 324 aa17.63■□□□□ 0.41
CLN3-212ENST00000564574 PIGTQ969N2 578 aa17.63■□□□□ 0.41
CLN3-212ENST00000564574 ABCB9Q9NP78 766 aa17.63■□□□□ 0.41
CLN3-212ENST00000564574 ZNF879B4DU55 563 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 H3BSH0 61 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 SC5DO75845 299 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 GATBO75879 557 aaKnown RBP17.62■□□□□ 0.41
CLN3-212ENST00000564574 RGS9O75916 674 aaPredicted RBP17.62■□□□□ 0.41
CLN3-212ENST00000564574 BMP4P12644 408 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 GALP22466 123 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 MMP15P51511 669 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 MST1LQ2TV78 715 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 HIST2H2BCQ6DN03 193 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 PAMR1Q6UXH9 720 aa17.62■□□□□ 0.41
CLN3-212ENST00000564574 BHLHE23Q8NDY6 225 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms