RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 IKZF2Q9UKS7 526 aa5.85□□□□□ -1.47
USP28-202ENST00000535607 STRAPQ9Y3F4 350 aaKnown RBP5.85□□□□□ -1.47
USP28-202ENST00000535607 CBY1Q9Y3M2 126 aa5.85□□□□□ -1.47
USP28-202ENST00000535607 TMEM184BQ9Y519 407 aaPredicted RBP5.85□□□□□ -1.47
USP28-202ENST00000535607 TIMM10BQ9Y5J6 103 aa5.85□□□□□ -1.47
USP28-202ENST00000535607 ENTPD2Q9Y5L3 495 aa5.85□□□□□ -1.47
USP28-202ENST00000535607 IER3IP1Q9Y5U9 82 aa5.85□□□□□ -1.47
USP28-202ENST00000535607 TP53BP1Q12888 1972 aaPredicted RBP5.85□□□□□ -1.47
USP28-202ENST00000535607 PLXND1Q9Y4D7 1925 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 TRAV27A0A087WT01 109 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 TBC1D3IA0A087WXS9 549 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 A0A0B4J2E0 115 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 KRTAP9-6A0A140TA67 174 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 A0A1B0GX12 115 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 FEZF1A0PJY2 475 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 EFCAB7A8K855 629 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 SLC31A2O15432 143 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 FCMRO60667 390 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 PLGP00747 810 aaPredicted RBP5.84□□□□□ -1.47
USP28-202ENST00000535607 IFNA2P01563 188 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 IGHV2-5P01817 119 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 THY1P04216 161 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 GYPBP06028 91 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 PNMTP11086 282 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 LYL1P12980 280 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 ZNF44P15621 663 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 MUC1P15941 1255 aaPredicted RBP5.84□□□□□ -1.47
USP28-202ENST00000535607 HIST1H1CP16403 213 aaKnown RBP5.84□□□□□ -1.47
USP28-202ENST00000535607 CXCR1P25024 350 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 CHATP28329 748 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 HTR2CP28335 458 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 MAS1LP35410 378 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 HTR5AP47898 357 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 CDX1P47902 265 aaPredicted RBP5.84□□□□□ -1.47
USP28-202ENST00000535607 SOX2P48431 317 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 RAB28P51157 221 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 AKR1C2P52895 323 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 FXYD6P3P58550 94 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 AKR1C1Q04828 323 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 PLA2G7Q13093 441 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 SRSF5Q13243 272 aaKnown RBP5.84□□□□□ -1.47
USP28-202ENST00000535607 HNF4GQ14541 408 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 BEX5Q5H9J7 111 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 ALG10BQ5I7T1 473 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 FNDC7Q5VTL7 733 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 NKAIN2Q5VXU1 208 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 NSUN5P2Q63ZY6 315 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 OR52W1Q6IF63 320 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 KCTD18Q6PI47 426 aaPredicted RBP5.84□□□□□ -1.47
USP28-202ENST00000535607 KCTD9Q7L273 389 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 SLC29A4Q7RTT9 530 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 TAF8Q7Z7C8 310 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 HMGN2P46Q86SG4 172 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 EXD3Q8N9H8 876 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 ZNF565Q8N9K5 539 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 BOLLQ8N9W6 283 aaKnown RBP5.84□□□□□ -1.47
USP28-202ENST00000535607 MFSD9Q8NBP5 474 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 OR7G2Q8NG99 324 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 OR51D1Q8NGF3 324 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 OR5AR1Q8NGP9 310 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 OR13D1Q8NGV5 346 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 OR2L8Q8NGY9 312 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 OR2G2Q8NGZ5 317 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 GTF3AQ92664 365 aaKnown RBP5.84□□□□□ -1.47
USP28-202ENST00000535607 FAM46BQ96A09 425 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 TMEM106AQ96A25 262 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 S100PBPQ96BU1 408 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 SEH1LQ96EE3 360 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 SEC22AQ96IW7 307 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 IL17FQ96PD4 163 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 SERINC2Q96SA4 455 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 GPX7Q96SL4 187 aaPredicted RBP5.84□□□□□ -1.47
USP28-202ENST00000535607 PRRX2Q99811 253 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 ALG12Q9BV10 488 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 GGACTQ9BVM4 153 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 WDR76Q9H967 626 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 TAF9BQ9HBM6 251 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 KCNJ16Q9NPI9 418 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 C20orf141Q9NUB4 165 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 LUZP4Q9P127 313 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 CES1P1Q9UKY3 287 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 RAB22AQ9UL26 194 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 GTF2A1LQ9UNN4 478 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 C19orf53Q9UNZ5 99 aaPredicted RBP5.84□□□□□ -1.47
USP28-202ENST00000535607 DHDHQ9UQ10 334 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 FARSAQ9Y285 508 aaKnown RBP5.84□□□□□ -1.47
USP28-202ENST00000535607 KCNIP3Q9Y2W7 256 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 ATG4BQ9Y4P1 393 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 HEBP2Q9Y5Z4 205 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 HS3ST3A1Q9Y663 406 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 SLC22A7Q9Y694 548 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 KCNE3Q9Y6H6 103 aa5.84□□□□□ -1.47
USP28-202ENST00000535607 TBC1D3DA0A087WVF3 549 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 LOC390937A0A1W2PQ73 354 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 C7orf77A4D0Y5 90 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 SYNDIG1LA6NDD5 238 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 CXorf65A6NEN9 183 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 GLOD5A6NK44 160 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 OR6C76A6NM76 312 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 OR52A4PA6NMU1 304 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms