RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 SRMP19623 302 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 CD40P25942 277 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 CFPP27918 469 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 THBS4P35443 961 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 DDOSTP39656 456 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 GSK3AP49840 483 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 UCP2P55851 309 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 PRSS12P56730 875 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 OR10A3P58181 314 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 ERVS71-1P61550 626 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 PPP1CBP62140 327 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 SRSF1Q07955 248 aaKnown RBP eCLIP7.09□□□□□ -1.27
USP4-210ENST00000483212 HLXQ14774 488 aaPredicted RBP7.09□□□□□ -1.27
USP4-210ENST00000483212 MSMPQ1L6U9 139 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 CRIP3Q6Q6R5 217 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 FBXW12Q6X9E4 464 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 TPRA1Q86W33 373 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 WFDC8Q8IUA0 241 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 OR5AS1Q8N127 324 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 SEMA6DQ8NFY4 1073 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 OR51A2Q8NGJ7 313 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 UBASH3BQ8TF42 649 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 SSC4DQ8WTU2 575 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 ITFG2Q969R8 447 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 SLC25A46Q96AG3 418 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 FGGYQ96C11 551 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 C10orf35Q96D05 121 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 MARS2Q96GW9 593 aaKnown RBP7.09□□□□□ -1.27
USP4-210ENST00000483212 NXF2Q9GZY0 626 aaKnown RBP7.09□□□□□ -1.27
USP4-210ENST00000483212 KCNJ16Q9NPI9 418 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 SNTG1Q9NSN8 517 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 CCDC59Q9P031 241 aaKnown RBP7.09□□□□□ -1.27
USP4-210ENST00000483212 PLEKHB1Q9UF11 243 aaPredicted RBP7.09□□□□□ -1.27
USP4-210ENST00000483212 RALYQ9UKM9 306 aaKnown RBP7.09□□□□□ -1.27
USP4-210ENST00000483212 FOXJ3Q9UPW0 622 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 RTTNQ86VV8 2226 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 PRR14LQ5THK1 2151 aa7.09□□□□□ -1.27
USP4-210ENST00000483212 SMIM30A4D0T7 59 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 A6NIN4 97 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 ATP6V1G2-DDX39BF2Z307 99 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 CASKO14936 926 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 SIAH2O43255 324 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 MTRF1O75570 445 aaKnown RBP7.08□□□□□ -1.28
USP4-210ENST00000483212 NCR1O76036 304 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 ALX3O95076 343 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 CD2P06729 351 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 FAHP16930 419 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 IGFBP2P18065 325 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 RAB3BP20337 219 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 TUBG1P23258 451 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 CFL1P23528 166 aaKnown RBP7.08□□□□□ -1.28
USP4-210ENST00000483212 MYL9P24844 172 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 PTAFRP25105 342 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 LOXP28300 417 aaPredicted RBP7.08□□□□□ -1.28
USP4-210ENST00000483212 THBS2P35442 1172 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 CAV3P56539 151 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 MXD1Q05195 221 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 MALLQ13021 153 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 SNTB1Q13884 538 aaKnown RBP7.08□□□□□ -1.28
USP4-210ENST00000483212 SPATA46Q5T0L3 261 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 NCMAPQ5T1S8 102 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 ZBTB37Q5TC79 503 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 UTS2BQ765I0 119 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 MRPL21Q7Z2W9 205 aaKnown RBP7.08□□□□□ -1.28
USP4-210ENST00000483212 RNF144BQ7Z419 303 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 COMMD2Q86X83 199 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 SERPINA12Q8IW75 414 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 DMRTC2Q8IXT2 367 aaPredicted RBP7.08□□□□□ -1.28
USP4-210ENST00000483212 OR56B2PQ8NGI1 322 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 OR1J1Q8NGS3 322 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 LINC01560Q8TB33 94 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 SLC25A40Q8TBP6 338 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 ZC3HAV1LQ96H79 300 aaKnown RBP7.08□□□□□ -1.28
USP4-210ENST00000483212 OR2J1Q9GZK6 312 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 CHST5Q9GZS9 411 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 FGF23Q9GZV9 251 aaPredicted RBP7.08□□□□□ -1.28
USP4-210ENST00000483212 OR51B6Q9H340 312 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 OPA3Q9H6K4 179 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 PPP1R3EQ9H7J1 279 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 TUBG2Q9NRH3 451 aa7.08□□□□□ -1.28
USP4-210ENST00000483212 EIF3KQ9UBQ5 218 aaKnown RBP7.08□□□□□ -1.28
USP4-210ENST00000483212 CD300LBA8K4G0 201 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 NOTOA8MTQ0 251 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 PYCARD-AS1I3L0S3 204 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 C19orf84I3L1E1 186 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 LILRA1O75019 489 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 CST4P01036 141 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 CRYAAP02489 173 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 PRF1P14222 555 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 RAC2P15153 192 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 ZNF20P17024 532 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 GLRXP35754 106 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 MPV17P39210 176 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 RAD52P43351 418 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 MAP2K3P46734 347 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 BSPH1Q075Z2 132 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 RIPPLY1Q0D2K3 151 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 PSG7Q13046 419 aa7.07□□□□□ -1.28
USP4-210ENST00000483212 HNRNPA0Q13151 305 aaKnown RBP7.07□□□□□ -1.28
USP4-210ENST00000483212 SNTB2Q13425 540 aaKnown RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms