RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 HMGN2P46Q86SG4 172 aa8.16□□□□□ -1.1
NIPBL-202ENST00000448238 TMEM262E9PQX1 116 aa8.16□□□□□ -1.1
NIPBL-202ENST00000448238 KCNAB3O43448 404 aa8.16□□□□□ -1.1
NIPBL-202ENST00000448238 KMT5CQ86Y97 462 aa8.16□□□□□ -1.1
NIPBL-202ENST00000448238 STXBP6Q8NFX7 210 aa8.16□□□□□ -1.1
NIPBL-202ENST00000448238 XRCC2O43543 280 aa8.16□□□□□ -1.1
NIPBL-202ENST00000448238 RBP4P02753 201 aa8.16□□□□□ -1.1
NIPBL-202ENST00000448238 HIST1H1TP22492 207 aaPredicted RBP8.16□□□□□ -1.1
NIPBL-202ENST00000448238 PRTGQ2VWP7 1150 aa8.16□□□□□ -1.1
NIPBL-202ENST00000448238 EMC4Q5J8M3 183 aa8.16□□□□□ -1.1
NIPBL-202ENST00000448238 NSUN5P2Q63ZY6 315 aa8.16□□□□□ -1.1
NIPBL-202ENST00000448238 DUSP21Q9H596 190 aa8.16□□□□□ -1.1
NIPBL-202ENST00000448238 SPATA31E1Q6ZUB1 1445 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 DDTLA6NHG4 134 aaPredicted RBP8.15□□□□□ -1.1
NIPBL-202ENST00000448238 COL8A1P27658 744 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 ZNF273Q14593 569 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 LRRC10Q5BKY1 277 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 MBOAT2Q6ZWT7 520 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 CYS1Q717R9 158 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 PPP1R1CQ8WVI7 109 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 PCNPQ8WW12 178 aaKnown RBP8.15□□□□□ -1.1
NIPBL-202ENST00000448238 TMEM38BQ9NVV0 291 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 TMED3Q9Y3Q3 217 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 ZNF737O75373 536 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 CD14P08571 375 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 ID1P41134 155 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 LYG2Q86SG7 212 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 MAGI2Q86UL8 1455 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 A6NL46 340 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 DOK2O60496 412 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 CD96P40200 585 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 CCR2P41597 374 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 FOXO1Q12778 655 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 AANATQ16613 207 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 CTF1Q16619 201 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 MRPL2Q5T653 305 aaKnown RBP8.15□□□□□ -1.1
NIPBL-202ENST00000448238 ZBTB37Q5TC79 503 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 MTMR14Q8NCE2 650 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 GLIS3Q8NEA6 775 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 OR10G8Q8NGN5 311 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 MRIQ9BWK5 157 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 UQCR10Q9UDW1 63 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 FREM1Q5H8C1 2179 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 NCR1O76036 304 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 UTS2O95399 124 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 COMPP49747 757 aaPredicted RBP8.15□□□□□ -1.1
NIPBL-202ENST00000448238 SNRPEP62304 92 aaKnown RBP8.15□□□□□ -1.1
NIPBL-202ENST00000448238 APCDD1Q8J025 514 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 FAM71CQ8NEG0 241 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 TMEM204Q9BSN7 226 aa8.15□□□□□ -1.1
NIPBL-202ENST00000448238 AMMECR1Q9Y4X0 333 aaPredicted RBP8.15□□□□□ -1.1
NIPBL-202ENST00000448238 CDX4O14627 284 aaPredicted RBP8.15□□□□□ -1.11
NIPBL-202ENST00000448238 CST4P01036 141 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 HOXD13P35453 343 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 MEF2CQ06413 473 aaPredicted RBP8.15□□□□□ -1.11
NIPBL-202ENST00000448238 ZNF77Q15935 545 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 DEFB115Q30KQ5 88 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 TMEM128Q5BJH2 165 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 CDCA2Q69YH5 1023 aaPredicted RBP8.15□□□□□ -1.11
NIPBL-202ENST00000448238 USP53Q70EK8 1073 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 CLECL1Q8IZS7 167 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 RAB1BQ9H0U4 201 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 CES1P1Q9UKY3 287 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 NME4O00746 187 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 TNFSF11O14788 317 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 HOXA3O43365 443 aaPredicted RBP8.15□□□□□ -1.11
NIPBL-202ENST00000448238 EDN1P05305 212 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 ACHEP22303 614 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 IVDP26440 423 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 IHHQ14623 411 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 FAM110CQ1W6H9 321 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 PLPP6Q8IY26 295 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 OR13C6PQ8NH95 151 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 EDAQ92838 391 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 OPALINQ96PE5 141 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 ZMAT3Q9HA38 289 aaKnown RBP8.15□□□□□ -1.11
NIPBL-202ENST00000448238 RASL12Q9NYN1 266 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 EDN3P14138 238 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 SLC35B1P78383 322 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 DNLZQ5SXM8 178 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 DPPA3Q6W0C5 159 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 FAM26EQ8N5C1 309 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 SYT8Q8NBV8 401 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 OR8G5Q8NG78 346 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 VN1R17PQ8TDU5 208 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 CA5BP1Q8WTZ4 195 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 NIPSNAP1Q9BPW8 284 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 ICAM5Q9UMF0 924 aa8.15□□□□□ -1.11
NIPBL-202ENST00000448238 TNFRSF1BP20333 461 aa8.14□□□□□ -1.11
NIPBL-202ENST00000448238 SPINT3P49223 89 aa8.14□□□□□ -1.11
NIPBL-202ENST00000448238 PRLHRP49683 370 aa8.14□□□□□ -1.11
NIPBL-202ENST00000448238 PNLIPRP3Q17RR3 467 aa8.14□□□□□ -1.11
NIPBL-202ENST00000448238 RRN3P1Q2M238 152 aa8.14□□□□□ -1.11
NIPBL-202ENST00000448238 TMEM249Q2WGJ8 235 aa8.14□□□□□ -1.11
NIPBL-202ENST00000448238 DCAF12Q5T6F0 453 aa8.14□□□□□ -1.11
NIPBL-202ENST00000448238 TMEM81Q6P7N7 255 aa8.14□□□□□ -1.11
NIPBL-202ENST00000448238 OR8B3Q8NGG8 313 aa8.14□□□□□ -1.11
NIPBL-202ENST00000448238 FAM163AQ96GL9 167 aaPredicted RBP8.14□□□□□ -1.11
NIPBL-202ENST00000448238 MIOXQ9UGB7 285 aa8.14□□□□□ -1.11
NIPBL-202ENST00000448238 CD163L1Q9NR16 1453 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms