RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 PTP4A3O75365 173 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 NEURL1O76050 574 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 CTSLP07711 333 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 HOXC4P09017 264 aaPredicted RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 DTYMKP23919 212 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 SEC13P55735 322 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 PKIAP61925 76 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 PJVKQ0ZLH3 352 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 HNRNPA1L2Q32P51 320 aaKnown RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 REC114Q7Z4M0 266 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 VRK3Q8IV63 474 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 ZNF100Q8IYN0 542 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 ARHGEF39Q8N4T4 335 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 FAM24BQ8N5W8 94 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 CELF5Q8N6W0 485 aaKnown RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 MENTQ9BUN1 341 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 C11orf68Q9H3H3 251 aaKnown RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 CUTCQ9NTM9 273 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 A0A0B4J203 849 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 FAM24AA6NFZ4 105 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 PDE6DO43924 150 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 CA11O75493 328 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 HAND1O96004 215 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 GAPDHP04406 335 aaKnown RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 SFTA3P0C7M3 94 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 SMIM17P0DL12 118 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 FSTP19883 344 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 GLRA1P23415 457 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 ITGB8P26012 769 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 VRK2Q86Y07 508 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 OR56B1Q8NGI3 324 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 ASB5Q8WWX0 329 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 FOXC2Q99958 501 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 PSMG3Q9BT73 122 aaPredicted RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 ZNF160Q9HCG1 818 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 FBLN5Q9UBX5 448 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 PISDQ9UG56 409 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 HSPB8Q9UJY1 196 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 HHLA2Q9UM44 414 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 ZNF354AO60765 605 aaPredicted RBP5.8□□□□□ -1.48
VPS35-201ENST00000299138 TK1P04183 234 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 DAOP14920 347 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 ATF1P18846 271 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 CSN1S1P47710 185 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 CTSCP53634 463 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 CTXN1P60606 82 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 ACTR1AP61163 376 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 RHOBP62745 196 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 DGCR2P98153 550 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 ST3GAL2Q16842 350 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 MRPL21Q7Z2W9 205 aaKnown RBP5.8□□□□□ -1.48
VPS35-201ENST00000299138 MDGA2Q7Z553 956 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 ADGRE4PQ86SQ3 457 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 TSLPQ969D9 159 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 OR10C1Q96KK4 312 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 SLC46A1Q96NT5 459 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 CIB3Q96Q77 187 aaPredicted RBP5.8□□□□□ -1.48
VPS35-201ENST00000299138 CHRDL1Q9BU40 450 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 NAT8BQ9UHF3 227 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 SIGLEC7Q9Y286 467 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 SCN1AP35498 2009 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 CROCCQ5TZA2 2017 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 ZNF264O43296 627 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 LEFTY1O75610 366 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 CD14P08571 375 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 FABP2P12104 132 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 CPMP14384 443 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 IL2RGP31785 369 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 DLX2Q07687 328 aaPredicted RBP5.8□□□□□ -1.48
VPS35-201ENST00000299138 GAB4Q2WGN9 574 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 HSD11B1LQ7Z5J1 315 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 OR8G5Q8NG78 346 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 OR11H7Q8NGC8 314 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 SH3RF2Q8TEC5 729 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 ABHD1Q96SE0 405 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 CDCP1Q9H5V8 836 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 LHX6Q9UPM6 363 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 SMCHD1A6NHR9 2005 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 GPR75O95800 540 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 HTR2CP28335 458 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 TIGITQ495A1 244 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 METRNLQ641Q3 311 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 OPN5Q6U736 354 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 DPPA3Q6W0C5 159 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 ZNF595Q8IYB9 648 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 CHST14Q8NCH0 376 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 SCAMP4Q969E2 229 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 HCAR1Q9BXC0 346 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 MMP26Q9NRE1 261 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 DOK5Q9P104 306 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 ICAM5Q9UMF0 924 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 J3QRE1 110 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 PRAMEF4O60810 478 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 JTBO76095 146 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 GSTP1P09211 210 aaKnown RBP5.8□□□□□ -1.48
VPS35-201ENST00000299138 G6PCP35575 357 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 HINT1P49773 126 aaPredicted RBP5.8□□□□□ -1.48
VPS35-201ENST00000299138 CSNK1G2P78368 415 aa5.8□□□□□ -1.48
VPS35-201ENST00000299138 MEF2AQ02078 507 aaPredicted RBP5.8□□□□□ -1.48
VPS35-201ENST00000299138 SRYQ05066 204 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms