RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 CASKO14936 926 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 DHRS3O75911 302 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 CDRT1O95170 752 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 IL1AP01583 271 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 TUBG1P23258 451 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 WNT5AP41221 380 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 RAD52P43351 418 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 NAAAQ02083 359 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 SRSF1Q07955 248 aaKnown RBP eCLIP13.36□□□□□ -0.274e-11■■□□□ 13.4
UPF1-206ENST00000598471 CNPY1Q3B7I2 92 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 TMEM108Q6UXF1 575 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 MRPL21Q7Z2W9 205 aaKnown RBP13.36□□□□□ -0.27
UPF1-206ENST00000598471 PAQR4Q8N4S7 273 aaPredicted RBP13.36□□□□□ -0.27
UPF1-206ENST00000598471 PLPP7Q8NBV4 271 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 OR2AE1Q8NHA4 323 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 NDNFQ8TB73 568 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 ITLN2Q8WWU7 325 aaPredicted RBP13.36□□□□□ -0.27
UPF1-206ENST00000598471 SPSB4Q96A44 273 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 C10orf35Q96D05 121 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 BCL2L14Q9BZR8 327 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 RNF167Q9H6Y7 350 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 TCF7L1Q9HCS4 588 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 TUBG2Q9NRH3 451 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 ZNF275Q9NSD4 429 aaPredicted RBP13.36□□□□□ -0.27
UPF1-206ENST00000598471 NBASA2RRP1 2371 aa13.36□□□□□ -0.27
UPF1-206ENST00000598471 TRAV1-2A0A0B4J238 106 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 IGHV2OR16-5A0A0B4J2B6 119 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 A0A1W2PPK0 400 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 A0A1W2PPW3 197 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 TRIM64BA6NI03 449 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 PDCD5O14737 125 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 SMPD2O60906 423 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 ZNF35P13682 527 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 PTAFRP25105 342 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 GNALP38405 381 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 PEX19P40855 299 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 MAP2K3P46734 347 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 PPP1CBP62140 327 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 Q6ZSR3 168 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 RFPL4BQ6ZWI9 263 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 PGAP1Q75T13 922 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 TPRA1Q86W33 373 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 OR14K1Q8NGZ2 314 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 ZC3HAV1LQ96H79 300 aaKnown RBP13.35□□□□□ -0.27
UPF1-206ENST00000598471 LYZL4Q96KX0 146 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 SNTG1Q9NSN8 517 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 PTTG3PQ9NZH4 202 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 NPAP1Q9NZP6 1156 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 STARD10Q9Y365 291 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 V9GYS6 101 aa13.35□□□□□ -0.27
UPF1-206ENST00000598471 C5orf63A6NC05 138 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 FAM157BP0CG42 384 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 SRMP19623 302 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 FSTP19883 344 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 SDC2P34741 201 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 THBS4P35443 961 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 SOX6P35712 828 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 TGFBR1P36897 503 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 MAGEB1P43366 347 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 UCP2P55851 309 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 PPP3R1P63098 170 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 ZNF92Q03936 586 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 RIPPLY1Q0D2K3 151 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 FAM27D1Q5T7N8 215 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 SEZ6L2Q6UXD5 910 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 SERPINA12Q8IW75 414 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 ZNF101Q8IZC7 436 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 PARP16Q8N5Y8 322 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 SEMA6DQ8NFY4 1073 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 OR5D14Q8NGL3 314 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 OR1J1Q8NGS3 322 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 FGGYQ96C11 551 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 WFIKKN1Q96NZ8 548 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 DCUN1D5Q9BTE7 237 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 OR51B6Q9H340 312 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 PTTG2Q9NZH5 202 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 FOXJ3Q9UPW0 622 aa13.34□□□□□ -0.27
UPF1-206ENST00000598471 hCG_38984A0A1B0GV85 526 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 GGT3PA6NGU5 568 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 PIN1P1O15428 100 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 NGFP01138 241 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 THBDP07204 575 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 EPXP11678 715 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 ANOS1P23352 680 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 CD40P25942 277 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 GSK3AP49840 483 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 RPS23P62266 143 aaKnown RBP13.33□□□□□ -0.28
UPF1-206ENST00000598471 FAM3AP98173 230 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 MXD1Q05195 221 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 GK2Q14410 553 aaPredicted RBP13.33□□□□□ -0.28
UPF1-206ENST00000598471 OR8B8Q15620 311 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 DGUOKQ16854 277 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 ZBTB37Q5TC79 503 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 FTMTQ8N4E7 242 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 DYNC2LI1Q8TCX1 351 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 PP6455Q8WZ26 134 aa13.33□□□□□ -0.28
UPF1-206ENST00000598471 REPIN1Q9BWE0 567 aaKnown RBP13.33□□□□□ -0.28
UPF1-206ENST00000598471 PPIL3Q9H2H8 161 aaKnown RBP13.33□□□□□ -0.28
UPF1-206ENST00000598471 ESRP2Q9H6T0 727 aaKnown RBP13.33□□□□□ -0.28
UPF1-206ENST00000598471 NEK6Q9HC98 313 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms