RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TESK1Q15569 626 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 TMEM128Q5BJH2 165 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 NXF2Q9GZY0 626 aaKnown RBP13.81□□□□□ -0.2
CIITA-204ENST00000570546 DCTN6O00399 190 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 GSTZ1O43708 216 aaPredicted RBP13.81□□□□□ -0.2
CIITA-204ENST00000570546 ZNF626Q68DY1 528 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 RPP25Q9BUL9 199 aaKnown RBP13.81□□□□□ -0.2
CIITA-204ENST00000570546 HDGFL3Q9Y3E1 203 aa13.81□□□□□ -0.2
CIITA-204ENST00000570546 FAM166BA8MTA8 275 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 C2CD4DB7Z1M9 353 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 MPPED1O15442 326 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 ZNF354AO60765 605 aaPredicted RBP13.8□□□□□ -0.2
CIITA-204ENST00000570546 AQP8O94778 261 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 SRFP11831 508 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 COL9A1P20849 921 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 BATFQ16520 125 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 SAMD10Q9BYL1 202 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 LMO7DNF2Z398 122 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 KLRC4-KLRK1H3BQV0 150 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 OGG1O15527 345 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 FMODQ06828 376 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 DMRTC1Q5HYR2 192 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 TMEM268Q5VZI3 342 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 TWSG1Q9GZX9 223 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 A0A087WZY1 265 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 SHISA8B8ZZ34 492 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 PLA2G10O15496 165 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 PIGPP57054 158 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 ADIRFQ15847 76 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 MIA3Q5JRA6 1907 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 ADAM5Q6NVV9 412 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 Q6ZS52 159 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 PRSS42Q7Z5A4 293 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 ZDHHC22Q8N966 263 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 FER1L6-AS2Q96M78 137 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 UHRF2Q96PU4 802 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 FLRT3Q9NZU0 649 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 URGCP-MRPS24S4R325 110 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 SEMG1P04279 462 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 GRPP07492 148 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 INHBBP09529 407 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 MYF5P13349 255 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 DEFA6Q01524 100 aa13.8□□□□□ -0.2
CIITA-204ENST00000570546 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.8□□□□□ -0.2
CIITA-204ENST00000570546 ZNF724A8MTY0 619 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 METTL12A8MUP2 240 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 RGS13O14921 159 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 CTDSPLO15194 276 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 SSSCA1O60232 199 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 PSMB3P49720 205 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 LSM11P83369 360 aaKnown RBP eCLIP13.79□□□□□ -0.2
CIITA-204ENST00000570546 OR8G2PQ6IF36 304 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 C6orf15Q6UXA7 325 aaPredicted RBP13.79□□□□□ -0.2
CIITA-204ENST00000570546 FBXW5Q969U6 566 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 RTL8AQ9BWD3 113 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 DHHO43323 396 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 THBS4P35443 961 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 TMEM71Q6P5X7 295 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 NHLRC1Q6VVB1 395 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 OR5AS1Q8N127 324 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 FBLIM1Q8WUP2 373 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 KCNE4Q8WWG9 221 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 CCDC74BQ96LY2 380 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 SIPA1L1O43166 1804 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 XRCC2O43543 280 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 OR2C1O95371 312 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 FAHP16930 419 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 ELLP55199 621 aaPredicted RBP13.79□□□□□ -0.2
CIITA-204ENST00000570546 RAB11AP62491 216 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 MOGAT1Q96PD6 335 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 UBL7Q96S82 380 aaPredicted RBP13.79□□□□□ -0.2
CIITA-204ENST00000570546 HIPK2Q9H2X6 1198 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 WNT11O96014 354 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 SELENOPP49908 381 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 PPP1CAP62136 330 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 HYAL1Q12794 435 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 KIAA0141Q14154 515 aaPredicted RBP13.79□□□□□ -0.2
CIITA-204ENST00000570546 SIGIRRQ6IA17 410 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 RPUSD3Q6P087 351 aaKnown RBP13.79□□□□□ -0.2
CIITA-204ENST00000570546 ARRDC1Q8N5I2 433 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 GPA33Q99795 319 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 FAM234AQ9H0X4 552 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 RGPD3A6NKT7 1758 aaPredicted RBP13.79□□□□□ -0.2
CIITA-204ENST00000570546 RGPD4Q7Z3J3 1758 aa13.79□□□□□ -0.2
CIITA-204ENST00000570546 IGHV5-51A0A0C4DH38 117 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 SERPINE3A8MV23 424 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 GPR3P46089 330 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 VHLLQ6RSH7 139 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 MUCL1Q96DR8 90 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 MRM2Q9UI43 246 aaKnown RBP13.78□□□□□ -0.2
CIITA-204ENST00000570546 PTP4A1Q93096 173 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 GNPNAT1Q96EK6 184 aaPredicted RBP13.78□□□□□ -0.2
CIITA-204ENST00000570546 FOXQ1Q9C009 403 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 CXCL13O43927 109 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 GLAP06280 429 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 NME1P15531 152 aaKnown RBP13.78□□□□□ -0.2
CIITA-204ENST00000570546 RPS2P15880 293 aaKnown RBP13.78□□□□□ -0.2
CIITA-204ENST00000570546 F2RL1P55085 397 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 MYBPHQ13203 477 aa13.78□□□□□ -0.2
CIITA-204ENST00000570546 HAGHQ16775 308 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms