RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ZNF701Q9NV72 531 aaPredicted RBP8.46□□□□□ -1.05
CLIP1-214ENST00000540539 VSIG4Q9Y279 399 aa8.46□□□□□ -1.05
CLIP1-214ENST00000540539 V9GY05 133 aa8.46□□□□□ -1.05
CLIP1-214ENST00000540539 MYO9BQ13459 2157 aa8.46□□□□□ -1.05
CLIP1-214ENST00000540539 HELZP42694 1942 aaKnown RBP8.46□□□□□ -1.06
CLIP1-214ENST00000540539 AQP7P3A6NL99 342 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 GRXCR1A8MXD5 290 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 BHLHE40O14503 412 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 CDC40O60508 579 aaKnown RBP eCLIP8.46□□□□□ -1.06
CLIP1-214ENST00000540539 PRAMEF4O60810 478 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 MMP23AO75900 390 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 IL2RAP01589 272 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 FOLR1P15328 257 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 RPS26P62854 115 aaKnown RBP8.46□□□□□ -1.06
CLIP1-214ENST00000540539 MC1RQ01726 317 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 ACSM2AQ08AH3 577 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 CHIT1Q13231 466 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 CCSMST1Q4G0I0 132 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 GGTA1PQ4G0N0 100 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 PRAMEF9Q5VWM5 478 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 ACSM2BQ68CK6 577 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 RPUSD3Q6P087 351 aaKnown RBP8.46□□□□□ -1.06
CLIP1-214ENST00000540539 PRSS54Q6PEW0 395 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 ZNF738Q8NE65 137 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 OR5AK2Q8NH90 309 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 SMIM19Q96E16 107 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 PDCD1LG2Q9BQ51 273 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 LGR4Q9BXB1 951 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 NMES1Q9C002 83 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 RBKSQ9H477 322 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 ZNF552Q9H707 407 aaPredicted RBP8.46□□□□□ -1.06
CLIP1-214ENST00000540539 ADAP2Q9NPF8 381 aa8.46□□□□□ -1.06
CLIP1-214ENST00000540539 NLRC5Q86WI3 1866 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 A0A087WUU8 490 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 IGHV2OR16-5A0A0B4J2B6 119 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 A0A1B0GV50 99 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 SERPINE3A8MV23 424 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 KAT7O95251 611 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 DUS4LO95620 317 aaKnown RBP8.45□□□□□ -1.06
CLIP1-214ENST00000540539 CD160O95971 181 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 CST4P01036 141 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 CSTBP04080 98 aaKnown RBP8.45□□□□□ -1.06
CLIP1-214ENST00000540539 TACR2P21452 398 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 EDNRAP25101 427 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 EPHA8P29322 1005 aaPredicted RBP8.45□□□□□ -1.06
CLIP1-214ENST00000540539 SOAT1P35610 550 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 CLDN18P56856 261 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ARF6P62330 175 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 IL13RA1P78552 427 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 CDK5R1Q15078 307 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ARTNQ5T4W7 220 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 C1orf189Q5VU69 101 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 UNQ5815/PRO19632Q6UWF5 114 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 SLC25A42Q86VD7 318 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 SLC39A11Q8N1S5 342 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ARL14EPQ8N8R7 260 aaPredicted RBP8.45□□□□□ -1.06
CLIP1-214ENST00000540539 MCHR2Q969V1 340 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 IL17FQ96PD4 163 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 KLHDC3Q9BQ90 382 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 HCAR1Q9BXC0 346 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ANGPTL4Q9BY76 406 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ZNF319Q9P2F9 582 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ST3GAL6Q9Y274 331 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 SIGLEC7Q9Y286 467 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 WDR45Q9Y484 360 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ARID1AO14497 2285 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ETV2O00321 342 aaPredicted RBP8.45□□□□□ -1.06
CLIP1-214ENST00000540539 OR6A2O95222 327 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ONECUT2O95948 504 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 KNG1P01042 644 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 LINC00271P0C7V0 271 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ZNF735P0CB33 412 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 LYL1P12980 280 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 GLRA1P23415 457 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 COMPP49747 757 aaPredicted RBP8.45□□□□□ -1.06
CLIP1-214ENST00000540539 CEBPGP53567 150 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 RAE1P78406 368 aaKnown RBP8.45□□□□□ -1.06
CLIP1-214ENST00000540539 SCGB2A2Q13296 93 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 RAB11BQ15907 218 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 MEPCEQ7L2J0 689 aaKnown RBP8.45□□□□□ -1.06
CLIP1-214ENST00000540539 RFLNBQ8N5W9 214 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 OR2L2Q8NH16 312 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 FBXO32Q969P5 355 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 SMIM14Q96QK8 99 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 OR11A1Q9GZK7 315 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 MAGT1Q9H0U3 335 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 SLC32A1Q9H598 525 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 IL26Q9NPH9 171 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 INPP5EQ9NRR6 644 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 SOHLH2Q9NX45 425 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ZNF581Q9P0T4 197 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 VPS29Q9UBQ0 182 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 SLC7A7Q9UM01 511 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 PAM16Q9Y3D7 125 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 ETV7Q9Y603 341 aa8.45□□□□□ -1.06
CLIP1-214ENST00000540539 TRBV24-1A0A075B6N3 115 aa8.44□□□□□ -1.06
CLIP1-214ENST00000540539 FTCDNL1E5RQL4 147 aa8.44□□□□□ -1.06
CLIP1-214ENST00000540539 TAAR5O14804 337 aa8.44□□□□□ -1.06
CLIP1-214ENST00000540539 FGF10O15520 208 aaPredicted RBP8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms