RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TP53I11O14683 189 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ARPC3O15145 178 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ZNF264O43296 627 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 CHST10O43529 356 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 KDELR3O43731 214 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 OR10H3O60404 316 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 TPST1O60507 370 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 RAMP3O60896 148 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 SCO1O75880 301 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 VAMP5O95183 116 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 VAPBO95292 243 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 CTDNEP1O95476 244 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 IFNA21P01568 189 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 C1QBP02746 253 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ALPIP09923 528 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 TSPAN19P0C672 248 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 SMIM10L1P0DMW3 83 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 GTF2F2P13984 249 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 RPA2P15927 270 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 MUC1P15941 1255 aaPredicted RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 TSPAN8P19075 237 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 FCARP24071 287 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 HMGB2P26583 209 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 ELK4P28324 431 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 IL12BP29460 328 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 DDTP30046 118 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 GNRHRP30968 328 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 SHMT2P34897 504 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ETV6P41212 452 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 GRIA1P42261 906 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 MAGEA12P43365 314 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 IDH2P48735 452 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 MRPL19P49406 292 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 CSNK1EP49674 416 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 ACOT2P49753 483 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 RAB9AP51151 201 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 CCR6P51684 374 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 XKP51811 444 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 KPNA2P52292 529 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 FGF8P55075 233 aaPredicted RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 VSX2P58304 361 aaPredicted RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 DEFA1P59665 94 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 DEFA3P59666 94 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 RPS20P60866 119 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 RPS15P62841 145 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 HERV-K104P63124 156 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 PITPNAQ00169 270 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 EMX2Q04743 252 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 CSTF1Q05048 431 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 ECH1Q13011 328 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 DPYSL3Q14195 570 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ARL6IP1Q15041 203 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 CEBPEQ15744 281 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ATP6AP1Q15904 470 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 EXOC3L2Q2M3D2 409 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 C18orf21Q32NC0 220 aaPredicted RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 PIGGQ5H8A4 983 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 PRAMEF5Q5TYX0 476 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 OR2G6Q5TZ20 316 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 PRAMEF6Q5VXH4 476 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 PRAMEF7Q5VXH5 474 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ANKRD22Q5VYY1 191 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 TTC23Q5W5X9 447 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 TRIQKQ629K1 86 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 LPCAT4Q643R3 524 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 OR8G2PQ6IF36 304 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 SPESP1Q6UW49 350 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 TEX261Q6UWH6 196 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 CD164L2Q6UWJ8 174 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 DLEU7Q6UYE1 221 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 Q6ZPB1 254 aaPredicted RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 TMED4Q7Z7H5 227 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 DHDDSQ86SQ9 333 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 LINC01551Q86U37 167 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 TMEM135Q86UB9 458 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 THOC6Q86W42 341 aaKnown RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 SLC26A11Q86WA9 606 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 PAQR7Q86WK9 346 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 LRRC28Q86X40 367 aaPredicted RBP1.4□□□□□ -2.19
NUP54-208ENST00000508604 ECHDC2Q86YB7 292 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 RAB43Q86YS6 212 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ZDHHC21Q8IVQ6 265 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ZNF100Q8IYN0 542 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 BATF2Q8N1L9 274 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 SLC35F6Q8N357 371 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 STPG2Q8N412 459 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 C9orf62Q8N4C0 152 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 CERS5Q8N5B7 392 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ARRDC1Q8N5I2 433 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ATPAF2Q8N5M1 289 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 FAM86B1Q8N7N1 296 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 OR9K2Q8NGE7 335 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 OR56B1Q8NGI3 324 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 OR51L1Q8NGJ5 315 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 RAB2BQ8WUD1 216 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 RNF133Q8WVZ7 376 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 CACNG8Q8WXS5 425 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 ARNTL2Q8WYA1 636 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 CDS1Q92903 461 aa1.4□□□□□ -2.19
NUP54-208ENST00000508604 HGDQ93099 445 aa1.4□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms