RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ALDOBP05062 364 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 YES1P07947 543 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 SLC2A1P11166 492 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 CRYGSP22914 178 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 KLF9Q13886 244 aaPredicted RBP12.45□□□□□ -0.42
LIG3-205ENST00000585941 PLA1AQ53H76 456 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 DNM1P46Q6ZS02 220 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 SLC16A14Q7RTX9 510 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 SIAH3Q8IW03 269 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 MCEMP1Q8IX19 187 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 FDCSPQ8NFU4 85 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 OR1F12Q8NHA8 337 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 OR10A2Q9H208 303 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 DLL3Q9NYJ7 618 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 CGGBP1Q9UFW8 167 aaPredicted RBP12.45□□□□□ -0.42
LIG3-205ENST00000585941 ATPIF1Q9UII2 106 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 ZNF391Q9UJN7 358 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 N6AMT1Q9Y5N5 214 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 DHRS7CA6NNS2 312 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 ZNF587BE7ETH6 402 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 SYNGR3O43761 229 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 SCGNO76038 276 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 ALX3O95076 343 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 BPNT1O95861 308 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 HLA-DMAP28067 261 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 THBS4P35443 961 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 SSBP1Q04837 148 aaKnown RBP12.45□□□□□ -0.42
LIG3-205ENST00000585941 CLN3Q13286 438 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 SNTB2Q13425 540 aaKnown RBP12.45□□□□□ -0.42
LIG3-205ENST00000585941 CAMK2BQ13554 666 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 RAB12Q6IQ22 244 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 CDH24Q86UP0 819 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 OR52I2Q8NH67 350 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 FNDC9Q8TBE3 224 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 FAM71F1Q96KD3 344 aaPredicted RBP12.45□□□□□ -0.42
LIG3-205ENST00000585941 TAS2R8Q9NYW2 309 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 ZNF319Q9P2F9 582 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 FBLN5Q9UBX5 448 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 RAB22AQ9UL26 194 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 ZNF175Q9Y473 711 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 NUBP2Q9Y5Y2 271 aa12.45□□□□□ -0.42
LIG3-205ENST00000585941 METTL21EPA6NDL7 271 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 OR6C6A6NF89 314 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 HMX3A6NHT5 357 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 DLL1O00548 723 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 LDLRAD4O15165 306 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 DHRS3O75911 302 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 ITGB2P05107 769 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 FCGR2AP12318 317 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 B4GALT1P15291 398 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 RSPO1Q2MKA7 263 aaPredicted RBP12.44□□□□□ -0.42
LIG3-205ENST00000585941 KRTAP27-1Q3LI81 207 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 TSPO2Q5TGU0 170 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 ZNF627Q7L945 461 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 OR13C9Q8NGT0 318 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 OR14K1Q8NGZ2 314 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 PP6455Q8WZ26 134 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 APH1AQ96BI3 265 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 DEFB127Q9H1M4 99 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 ATG5Q9H1Y0 275 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 AUNIPQ9H7T9 357 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 V9GYS6 101 aa12.44□□□□□ -0.42
LIG3-205ENST00000585941 ANKRD20A5PA0PJZ0 165 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 INMT-MINDY4F8WBC2 141 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 SULT1C2O00338 296 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 CEACAM4O75871 244 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 RBBP9O75884 186 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 CCNKO75909 580 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 IGHG3P01860 377 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 ZNF32P17041 273 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 WT1P19544 449 aaPredicted RBP12.43□□□□□ -0.42
LIG3-205ENST00000585941 ZNF93P35789 620 aaPredicted RBP12.43□□□□□ -0.42
LIG3-205ENST00000585941 SRP9P49458 86 aaKnown RBP12.43□□□□□ -0.42
LIG3-205ENST00000585941 EFNB2P52799 333 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 RAG2P55895 527 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 SRSF6Q13247 344 aaKnown RBP12.43□□□□□ -0.42
LIG3-205ENST00000585941 FAM189A2Q15884 450 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 RNASE12Q5GAN4 147 aaKnown RBP12.43□□□□□ -0.42
LIG3-205ENST00000585941 UTS2BQ765I0 119 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 TUSC5Q8IXB3 177 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 WDYHV1Q96HA8 205 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 OR2H1Q9GZK4 316 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 ACTR6Q9GZN1 396 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 RGCCQ9H4X1 137 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 CNTD2Q9H8S5 307 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 CALHM2Q9HA72 323 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 SLC7A10Q9NS82 523 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 RHBDD3Q9Y3P4 386 aa12.43□□□□□ -0.42
LIG3-205ENST00000585941 ZFHX2Q9C0A1 2572 aaPredicted RBP12.43□□□□□ -0.42
LIG3-205ENST00000585941 CIB4A0PJX0 185 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 H7C417 338 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 DHFRP00374 187 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 UBBP0CG47 229 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 TMIGD3P0DMS9 266 aaPredicted RBP12.42□□□□□ -0.42
LIG3-205ENST00000585941 ABOP16442 354 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 ZNF24P17028 368 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 BTCP35070 178 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 FAUP35544 74 aaKnown RBP12.42□□□□□ -0.42
LIG3-205ENST00000585941 HTR5AP47898 357 aa12.42□□□□□ -0.42
LIG3-205ENST00000585941 PSG4Q00888 419 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms