RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 DHODHQ02127 395 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 SGCAQ16586 387 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 LRRC18Q8N456 261 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 OR1M1Q8NGA1 313 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 MARCH1Q8TCQ1 289 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 WNT2BQ93097 391 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 DDIT4LQ96D03 193 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 ZC3H10Q96K80 434 aaKnown RBP11.96□□□□□ -0.49
CLK3-215ENST00000564353 ZNF471Q9BX82 626 aaPredicted RBP11.96□□□□□ -0.49
CLK3-215ENST00000564353 BCL2L14Q9BZR8 327 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 LHFPL6Q9Y693 200 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 HTR3BO95264 441 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 ERCC1P07992 297 aaPredicted RBP11.96□□□□□ -0.49
CLK3-215ENST00000564353 ZNF93P35789 620 aaPredicted RBP11.96□□□□□ -0.49
CLK3-215ENST00000564353 NPY4RP50391 375 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 CLDN6P56747 220 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 GLIPR1L1Q6UWM5 242 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 FAM57BQ71RH2 274 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 TMEM229BQ8NBD8 167 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 POC1BQ8TC44 478 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 SCARB1Q8WTV0 552 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 GPER1Q99527 375 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 CRB3Q9BUF7 120 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 PHF7Q9BWX1 381 aaPredicted RBP11.96□□□□□ -0.49
CLK3-215ENST00000564353 PFDN2Q9UHV9 154 aa11.96□□□□□ -0.49
CLK3-215ENST00000564353 SDCBPO00560 298 aaPredicted RBP11.96□□□□□ -0.5
CLK3-215ENST00000564353 ZNHIT1O43257 154 aa11.96□□□□□ -0.5
CLK3-215ENST00000564353 STK17BO94768 372 aa11.96□□□□□ -0.5
CLK3-215ENST00000564353 HCKP08631 526 aa11.96□□□□□ -0.5
CLK3-215ENST00000564353 ZNF20P17024 532 aa11.96□□□□□ -0.5
CLK3-215ENST00000564353 C4BPBP20851 252 aa11.96□□□□□ -0.5
CLK3-215ENST00000564353 AFF3P51826 1226 aaKnown RBP11.96□□□□□ -0.5
CLK3-215ENST00000564353 ZNF121P58317 390 aaPredicted RBP11.96□□□□□ -0.5
CLK3-215ENST00000564353 ZNF260Q3ZCT1 412 aa11.96□□□□□ -0.5
CLK3-215ENST00000564353 TMEM244Q5VVB8 128 aa11.96□□□□□ -0.5
CLK3-215ENST00000564353 ARMC10Q8N2F6 343 aa11.96□□□□□ -0.5
CLK3-215ENST00000564353 BHLHE23Q8NDY6 225 aa11.96□□□□□ -0.5
CLK3-215ENST00000564353 RNF133Q8WVZ7 376 aa11.96□□□□□ -0.5
CLK3-215ENST00000564353 VRK1Q99986 396 aaPredicted RBP11.96□□□□□ -0.5
CLK3-215ENST00000564353 UBE2ZQ9H832 354 aaPredicted RBP11.96□□□□□ -0.5
CLK3-215ENST00000564353 FN3KRPQ9HA64 309 aa11.96□□□□□ -0.5
CLK3-215ENST00000564353 GPR84Q9NQS5 396 aa11.96□□□□□ -0.5
CLK3-215ENST00000564353 RALGAPA1Q6GYQ0 2036 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 A0A1W2PQM1 296 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 METTL21EPA6NDL7 271 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 C5orf51A6NDU8 294 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 F5H5K5 113 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 LDLRAD4O15165 306 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 ZNF205O95201 554 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 PMS2P2O95744 297 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 PLATP00750 562 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 HOXD4P09016 255 aaPredicted RBP11.95□□□□□ -0.5
CLK3-215ENST00000564353 FOSL2P15408 326 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 EPHA4P54764 986 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 SMAD4Q13485 552 aaKnown RBP11.95□□□□□ -0.5
CLK3-215ENST00000564353 SLC9A3R2Q15599 337 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 DNM1P34Q6PK57 102 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 UEVLDQ8IX04 471 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 NFAM1Q8NET5 270 aaPredicted RBP11.95□□□□□ -0.5
CLK3-215ENST00000564353 MFSD8Q8NHS3 518 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 CCDC107Q8WV48 283 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 C1orf198Q9H425 327 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 KIF25Q9UIL4 384 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 A0A0A6YYD4 124 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 A0A1B0GTQ1 180 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 A6NIZ1 184 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 RAP1BP61224 184 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 RAP1AP62834 184 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 CCL7P80098 99 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 PHF19Q5T6S3 580 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 DTX1Q86Y01 620 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 OR52H1Q8NGJ2 320 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 WDR77Q9BQA1 342 aaPredicted RBP11.95□□□□□ -0.5
CLK3-215ENST00000564353 ST6GALNAC5Q9BVH7 336 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 TMPRSS13Q9BYE2 586 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 ELL3Q9HB65 397 aaPredicted RBP11.95□□□□□ -0.5
CLK3-215ENST00000564353 UPB1Q9UBR1 384 aa11.95□□□□□ -0.5
CLK3-215ENST00000564353 OR14I1A6ND48 311 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 RFPL4AA6NLU0 287 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 MPTX1A8MV57 137 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 RFPL4AL1F8VTS6 287 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 IFNA6P05013 189 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 QDPRP09417 244 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 MPGP29372 298 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 SLC6A9P48067 706 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 DHPSP49366 369 aaPredicted RBP11.94□□□□□ -0.5
CLK3-215ENST00000564353 GALNTL5Q7Z4T8 443 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 FOXRED2Q8IWF2 684 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 CDH26Q8IXH8 852 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 PDZD9Q8IXQ8 264 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 OR8B12Q8NGG6 310 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 OR2AJ1Q8NGZ0 328 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 GNRHR2Q96P88 292 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 RAB33BQ9H082 229 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 OCIAD1Q9NX40 245 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 RHBDD3Q9Y3P4 386 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 HMSDA8MTL9 139 aa11.94□□□□□ -0.5
CLK3-215ENST00000564353 CRTAPO75718 401 aaPredicted RBP11.94□□□□□ -0.5
CLK3-215ENST00000564353 IGHMP01871 453 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms