RNA–Protein interactions for RNA: ENST00000555535.1

SRP54-207, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-207ENST00000555535 LYPD6BQ8NI32 183 aa0.69□□□□□ -2.3
SRP54-207ENST00000555535 RBPMSQ93062 196 aaKnown RBP0.69□□□□□ -2.3
SRP54-207ENST00000555535 DCPSQ96C86 337 aaKnown RBP0.69□□□□□ -2.3
SRP54-207ENST00000555535 GALNT14Q96FL9 552 aa0.69□□□□□ -2.3
SRP54-207ENST00000555535 IP6K3Q96PC2 410 aa0.69□□□□□ -2.3
SRP54-207ENST00000555535 NUDT9Q9BW91 350 aa0.69□□□□□ -2.3
SRP54-207ENST00000555535 FRMD8P1Q9BZ68 369 aaPredicted RBP0.69□□□□□ -2.3
SRP54-207ENST00000555535 ZSCAN16Q9H4T2 348 aaPredicted RBP0.69□□□□□ -2.3
SRP54-207ENST00000555535 CSNK1G1Q9HCP0 422 aa0.69□□□□□ -2.3
SRP54-207ENST00000555535 TAS2R5Q9NYW4 299 aa0.69□□□□□ -2.3
SRP54-207ENST00000555535 SLC17A7Q9P2U7 560 aa0.69□□□□□ -2.3
SRP54-207ENST00000555535 LGALS13Q9UHV8 139 aa0.69□□□□□ -2.3
SRP54-207ENST00000555535 VANGL2Q9ULK5 521 aa0.69□□□□□ -2.3
SRP54-207ENST00000555535 CAB39Q9Y376 341 aaPredicted RBP0.69□□□□□ -2.3
SRP54-207ENST00000555535 ZNF638Q14966 1978 aaKnown RBP0.68□□□□□ -2.3
SRP54-207ENST00000555535 IGKV1-27A0A075B6S5 117 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 IGHV1-3A0A0C4DH29 117 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 IGHV7-4-1A0A0J9YVY3 117 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 FAM240BA0A1B0GVZ2 78 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 HEATR9A2RTY3 570 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 NCBP2LA6PVI3 153 aaKnown RBP0.68□□□□□ -2.3
SRP54-207ENST00000555535 LYRM9A8MSI8 78 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 PRAMEF26H0Y7S4 382 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 AP3B1O00203 1094 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 RAD51CO43502 376 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 PLIN3O60664 434 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 CLDN11O75508 207 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 OXTP01178 125 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 IGHV3-11P01762 117 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 PFN1P07737 140 aaKnown RBP0.68□□□□□ -2.3
SRP54-207ENST00000555535 UQCRFS1P1P0C7P4 283 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 HSPD1P10809 573 aaKnown RBP0.68□□□□□ -2.3
SRP54-207ENST00000555535 SLC2A3P11169 496 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 ZNF35P13682 527 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 ZNF43P17038 809 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 ATF6P18850 670 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 PSMB5P28074 263 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 GTF2E2P29084 291 aaKnown RBP0.68□□□□□ -2.3
SRP54-207ENST00000555535 OR1E1P30953 314 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 BMI1P35226 326 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 SLC1A1P43005 524 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 GALR1P47211 349 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 SERPINB8P50452 374 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 CDH6P55285 790 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 GFERP55789 205 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 SYNJ2BPP57105 145 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 UBE2MP61081 183 aaKnown RBP0.68□□□□□ -2.3
SRP54-207ENST00000555535 CCNA1P78396 465 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 SELENBP1Q13228 472 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 FAM53BQ14153 422 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 IHHQ14623 411 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 QPRTQ15274 297 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 TAF7Q15545 349 aaPredicted RBP0.68□□□□□ -2.3
SRP54-207ENST00000555535 CHRNA6Q15825 494 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 SLC25A35Q3KQZ1 300 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 ALKBH6Q3KRA9 238 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 TPTE2P1Q5T6R2 138 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 C9orf135Q5VTT2 229 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 TBPL2Q6SJ96 375 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 FAM131AQ6UXB0 335 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 Q6ZSR6 202 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 MBOAT2Q6ZWT7 520 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 SLC16A14Q7RTX9 510 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 DAZ4Q86SG3 579 aaKnown RBP0.68□□□□□ -2.3
SRP54-207ENST00000555535 FAM228AQ86W67 206 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 CDH26Q8IXH8 852 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 APCDD1LQ8NCL9 501 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 OR4A4PQ8NGN8 299 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 OR6Q1Q8NGQ2 317 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 HGDQ93099 445 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 RERGQ96A58 199 aaPredicted RBP0.68□□□□□ -2.3
SRP54-207ENST00000555535 PRRC1Q96M27 445 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 RNF145Q96MT1 663 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 DSN1Q9H410 356 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 LINC00574Q9H8X3 128 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 MRM3Q9HC36 420 aaKnown RBP0.68□□□□□ -2.3
SRP54-207ENST00000555535 MED4Q9NPJ6 270 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 DAZ1Q9NQZ3 744 aaKnown RBP0.68□□□□□ -2.3
SRP54-207ENST00000555535 SLC39A1Q9NY26 324 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 CCDC59Q9P031 241 aaKnown RBP0.68□□□□□ -2.3
SRP54-207ENST00000555535 KCNE3Q9Y6H6 103 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 COMMD3-BMI1R4GMX3 469 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 KANK1Q14678 1352 aa0.68□□□□□ -2.3
SRP54-207ENST00000555535 MROH7Q68CQ1 1323 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 UBN2Q6ZU65 1347 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 IGHV3-72A0A0B4J1Y9 119 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 K7EMT4 169 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 M0R1X1 148 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 CPLX1O14810 134 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 CHMP2AO43633 222 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 CCDC22O60826 627 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 FGFR1OPO95684 399 aaKnown RBP0.67□□□□□ -2.3
SRP54-207ENST00000555535 LSM8O95777 96 aaKnown RBP0.67□□□□□ -2.3
SRP54-207ENST00000555535 SERPINE2P07093 398 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 NTF3P20783 257 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 BCKDHBP21953 392 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 RRM2P31350 389 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 FOXN2P32314 431 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 CD70P32970 193 aa0.67□□□□□ -2.3
SRP54-207ENST00000555535 UBE2E1P51965 193 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms